Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0288
(440 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 31 0.46
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c... 29 1.1
At5g03560.1 68418.m00314 expressed protein 28 3.2
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 28 3.2
At1g75730.1 68414.m08797 expressed protein 27 5.6
At3g01810.1 68416.m00123 expressed protein 27 7.4
At1g80410.1 68414.m09413 acetyltransferase-related low similarit... 27 7.4
At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138... 27 7.4
At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase... 27 7.4
At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase... 27 7.4
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 7.4
At3g57140.2 68416.m06362 patatin-related contains Patatin domain... 26 9.8
At3g57140.1 68416.m06361 patatin-related contains Patatin domain... 26 9.8
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 26 9.8
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 30.7 bits (66), Expect = 0.46
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -2
Query: 427 FLFYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSR-DARVKK 251
FL + P A SLN A L + T KSS+ YS LY D R R + V
Sbjct: 13 FLAFIVPRANTSLNHRFASARLSTATVSLRTKSSSFYS-----AALYSDSRRRFHSAVAS 67
Query: 250 KTDSIDLRDPNGFDXASRVLNAKR 179
+ + D + FD AS +L R
Sbjct: 68 DSSLAVVDDEDIFDVASEILPDNR 91
>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
contains Pfam profile PF05180: DNL zinc finger
Length = 170
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -2
Query: 421 FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 242
FY+ +L+RS+ + TP+Q +S + + ++L PD S D+ +
Sbjct: 39 FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95
Query: 241 SIDLRDP 221
SID++ P
Sbjct: 96 SIDIKLP 102
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 27.9 bits (59), Expect = 3.2
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = -2
Query: 427 FLFYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYS---EPRHRTELYPDLRSRDARV 257
F FY S + S S D L +++ R+E+K++ +S + H +L P+LR R V
Sbjct: 48 FAFYSSSSSWWS---SPDD--LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFV 102
Query: 256 KKKTDSIDL 230
+ +TD I++
Sbjct: 103 RSETDIINV 111
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 334 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGF 212
K S + +PR R LY D + + + K+T S+D+ NGF
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGF 179
>At1g75730.1 68414.m08797 expressed protein
Length = 589
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 286 PDLRSRDARVKKKTDSIDLRDPNGFDXAS 200
PDL + ++ K K +L+D NG D AS
Sbjct: 58 PDLENEVSKKKSKLPKKNLKDTNGVDHAS 86
>At3g01810.1 68416.m00123 expressed protein
Length = 921
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 415 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 251
+S + L +NRS +L S ERK + Y H T L +++ ++RVKK
Sbjct: 367 KSVRSSLDINRSNSRLSLFS-----ERKEAKVYPNSTHDTTLESKIKNLESRVKK 416
>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
to acetyltransferase Tubedown-1 [Mus musculus]
GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
(Saccharomyces cerevisiae); contains Pfam profile
PF00515 TPR Domain
Length = 897
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -1
Query: 224 SKWVRRRVSRFECETRLVKSHCLEPPDS 141
S+W R F C T HC PDS
Sbjct: 831 SRWKSRCAEYFPCSTHFEGKHCSLMPDS 858
>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as '
auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 572
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -2
Query: 415 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 236
ES G + DAA+ T Q + D+SEP + E DL+ R S+
Sbjct: 498 ESRKLGKKNKSTNKDAAVTVTNDDQTEEDDPDWSEPDYEEE-QSDLQDRGL---YNGTSL 553
Query: 235 DLRDPNGFD 209
D DP+ D
Sbjct: 554 DYDDPSTSD 562
>At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase 2,
putative (NMT2) very similar to |PEM2_ARATH Putative
phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
(SP:Q944H0){Arabidopsis thaliana}; very similar to
Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
thaliana]; to similar to GB:AAF61950 from [Spinacia
oleracea]
Length = 491
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 340 ERKSS-TDYSEPRHRTELYPDLRSRDA 263
+RKS+ T Y EPR T+++ + ++RDA
Sbjct: 168 KRKSNPTHYREPRFYTKVFQECQTRDA 194
>At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase 2,
putative (NMT2) very similar to |PEM2_ARATH Putative
phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
(SP:Q944H0){Arabidopsis thaliana}; very similar to
Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
thaliana]; to similar to GB:AAF61950 from [Spinacia
oleracea]
Length = 475
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 340 ERKSS-TDYSEPRHRTELYPDLRSRDA 263
+RKS+ T Y EPR T+++ + ++RDA
Sbjct: 152 KRKSNPTHYREPRFYTKVFQECQTRDA 178
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 145 SGGSKQCDFTSRVSHSKRETRRRTHLDRGDRCYR 246
SGG+++CD + + SK E R+ ++ R Y+
Sbjct: 220 SGGNRECDVKAEENKSKPEERKEKVVEEQARRYQ 253
>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 233 SPRSKWVRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARL 96
SP SK + +RF R+ +C+ +S GS L +++RL
Sbjct: 591 SPPSKHLLAGTNRFNASKRIPSWNCIARQNSSGSVDDDVLAEASRL 636
>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 233 SPRSKWVRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARL 96
SP SK + +RF R+ +C+ +S GS L +++RL
Sbjct: 591 SPPSKHLLAGTNRFNASKRIPSWNCIARQNSSGSVDDDVLAEASRL 636
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 259 HVHHGSEGPDITQFDVGARNSL*TTSVPGG 348
HVH G++ +++ F A+NSL T G
Sbjct: 142 HVHIGNDMIEVSSFSTSAQNSLRNTRTGSG 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,177,525
Number of Sequences: 28952
Number of extensions: 210519
Number of successful extensions: 635
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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