Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0285
         (763 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7I151 Cluster: Putative probable lipopolysaccharide bi...    44   0.005
UniRef50_Q9Y561 Cluster: Low-density lipoprotein receptor-relate...    35   2.5  
UniRef50_Q04956 Cluster: Probable cation-transporting ATPase 1; ...    34   3.3  
UniRef50_P60109 Cluster: Formimidoylglutamase; n=2; Proteobacter...    33   7.7  

>UniRef50_A7I151 Cluster: Putative probable lipopolysaccharide
           biosynthesis protein; n=1; Campylobacter hominis ATCC
           BAA-381|Rep: Putative probable lipopolysaccharide
           biosynthesis protein - Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 327

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -2

Query: 528 TKH*PLQGRIF*RTKNVLFISKNLANVLNIHKKILYLHTSSSRIK 394
           TKH   +G+IF + KNV+ +SKN+AN +N   K++Y       IK
Sbjct: 107 TKHNNRKGKIFNKIKNVMAVSKNVANTINHESKVIYFGIDKQNIK 151


>UniRef50_Q9Y561 Cluster: Low-density lipoprotein receptor-related
           protein 12 precursor; n=28; Euteleostomi|Rep:
           Low-density lipoprotein receptor-related protein 12
           precursor - Homo sapiens (Human)
          Length = 859

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 526 CPRSMAPYCPCRTFCTFRTHCPIVPLP----IWRPKGF**EVRRCLEKSFMVDSQDDPPR 693
           C R+   Y P    C ++ HCP           +P  F  +  RC+ +S++ DSQDD   
Sbjct: 420 CSRNGVCY-PRSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDD--- 475

Query: 694 CGSDIDPSDCAIRLPS 741
           CG   D  +C + +P+
Sbjct: 476 CGDGSDEENCPVIVPT 491


>UniRef50_Q04956 Cluster: Probable cation-transporting ATPase 1;
           n=3; Plasmodium|Rep: Probable cation-transporting ATPase
           1 - Plasmodium falciparum
          Length = 1956

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = -1

Query: 550 NKEPSTEDKTLTSSGTNFLKD--KKCLV--HK*KFSKRTKYS*KNIISSHIVFSH*NCII 383
           N   S++ K++T   +NFL    K CL+  H  K  K+  Y+  N   + +  +   C  
Sbjct: 563 NLHTSSKKKSITKERSNFLVQTIKSCLLKDHYIKEKKKEYYT-NNTYCNDLHINDSTCSS 621

Query: 382 SKLTNFTDECFKGLTCDIFNINHLCNI 302
             L + T + +    C+ +NI+HLC+I
Sbjct: 622 YLLNSETKDAY----CEYYNIDHLCDI 644


>UniRef50_P60109 Cluster: Formimidoylglutamase; n=2;
           Proteobacteria|Rep: Formimidoylglutamase -
           Chromobacterium violaceum
          Length = 309

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 554 LAARFAPSGRTARSFPSRYGGPKDFDKRFAVASKSLSWSIARTIRR 691
           LA R A SG+ A +    +    D D   A A+  L+WS++R +RR
Sbjct: 264 LAGRIAKSGKLAGADLVEFNPDYDIDSHGAKAAARLAWSLSRHLRR 309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,779,722
Number of Sequences: 1657284
Number of extensions: 12842791
Number of successful extensions: 32643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32619
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)