Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0285
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.50 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   6.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 606 REGNDRAVRPEGAKRAARTIRSHRPRT 526
           R    R V+  GAK+ A T    RPRT
Sbjct: 207 RSPRTRRVKKPGAKQGAPTAEEKRPRT 233


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 690 RRIVLAIDHERLFEATANLLSKSFG 616
           R I+ ++DH   F  +A  L K+FG
Sbjct: 115 RTILESVDHRLAFVNSAQALVKNFG 139


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 553  DNKEPSTEDKTLTSSGTNFLKDK 485
            + K+P  +DK LT  G N   D+
Sbjct: 1052 EEKKPEKKDKVLTFLGANAQDDE 1074


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 553  DNKEPSTEDKTLTSSGTNFLKDK 485
            + K+P  +DK LT  G N   D+
Sbjct: 1052 EEKKPEKKDKVLTFLGANAQDDE 1074


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 748 GHLMVALSRNLTGLYRSRI 692
           GHL+ + S  L   YRSRI
Sbjct: 30  GHLLGSSSLPLRSFYRSRI 48


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 571 CKTCGKDNKEPST 533
           C+ CGK    PST
Sbjct: 252 CRICGKSYARPST 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,119
Number of Sequences: 336
Number of extensions: 3560
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)