Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0285
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   6.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   8.9  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 571 CKTCGK-DNKEPSTEDKTLTSSGTNFLKDKKCLVHK*KFSKRTKYS*KN 428
           C  C K  N   +  D ++ + G++     K  VH  K +K+ KY  +N
Sbjct: 261 CSVCKKPSNTYQALLDLSVDAKGSSLADSLKHFVHAEKLTKQNKYRCEN 309


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -3

Query: 710 SISEPHRGGSSWLSTMKDFSRQRRTSYQNPLGLHIGRGT----IGQCVLKVQNVRQGQ*G 543
           S  EP + G  W+   +D+  +  +    P+G   G G         +L V N   G   
Sbjct: 600 STYEPDKRGEGWIKVKQDYDDEFESLDLVPIGAWYGNGRKAGWFSPILLAVYNPDTGAYE 659

Query: 542 AIDRGQNINLFRDEFFK 492
           A+ +   ++ F D+F+K
Sbjct: 660 AVCK--CMSGFSDQFYK 674


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 327 LISIIFATFNFYFLSVTLS 271
           L+ I FA+  FYF+ +TLS
Sbjct: 155 LLLIFFASLKFYFVLITLS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,897
Number of Sequences: 5004
Number of extensions: 55623
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)