Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0285
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353...    32   0.57 
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437...    29   5.3  
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773...    28   7.1  

>07_01_0468 +
           3537669-3537890,3539003-3539130,3539398-3539621,
           3539660-3540062,3540398-3540473
          Length = 350

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 564 VLHLQDALPDRSPPDMEAQRILI--RGSPLPRKVFHGR*PGRSAAMRLRYRPVRLRDKAT 737
           ++H+ D L    PP   AQ  L+  R  PLP   FHG     +A  R R RP   RD+AT
Sbjct: 11  IIHVVDDLAPPPPPPPRAQPALVPPRILPLPPPAFHG-----AAVQRRRPRPPP-RDEAT 64


>04_04_0575 -
           26342697-26342885,26343030-26343165,26343279-26343795,
           26344286-26344381,26344933-26345011,26345329-26345712
          Length = 466

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 685 PPRCGSDIDPSDCAIRLPSG 744
           P R GSD+DPS C+ R  +G
Sbjct: 25  PARAGSDLDPSRCSAREEAG 44


>07_03_0797 +
           21575948-21576042,21576140-21576902,21577134-21577327,
           21577667-21577700,21578421-21578485,21579032-21579524
          Length = 547

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 VLAARFAPSGRTARSFPSRYGGPKDFDKR 637
           V A    PSG  A SFP+   GP++ DK+
Sbjct: 396 VEAMSINPSGEKAESFPAGSRGPRNADKK 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,084,171
Number of Sequences: 37544
Number of extensions: 335821
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)