Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0284
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.3  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   5.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   5.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 82   EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 210
            EYPKC+ V  +       +     +R  S     KN ++  A+
Sbjct: 2443 EYPKCWQVDCNKGPDSDKEAFAAFVRELSAAFKPKNLLLSAAV 2485


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 362 LPHCQSSFPPTTPASVQRK-PLSSKLFPSLPKFQRVLLKSSTMYTS 496
           +P  Q + P       Q K PLSS  +PS+    ++L+ S  M  S
Sbjct: 1   MPLLQETTPKRDMLDSQEKTPLSSVSYPSMFTPSQLLMASHLMAAS 46



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 177 HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 287
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 213


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 284 NTKPTLPLMCGNSFSRAGLL 225
           N KP +  +CG S++R   L
Sbjct: 246 NQKPNVCRICGKSYARPSTL 265


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 177 HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 287
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 60


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/39 (17%), Positives = 19/39 (48%)
 Frame = +2

Query: 41  GSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRY 157
           G + +   +SN+W    +  SW+ ++   ++ +   + Y
Sbjct: 177 GGIKSDSVTSNAWWDVHSTGSWLDMSGGMHQMANYSTDY 215


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  NYFVKIIQLLDEYPKCF 99
           N   KI  L+DE+ +CF
Sbjct: 214 NLHNKICNLIDEFNECF 230


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/22 (31%), Positives = 9/22 (40%)
 Frame = -2

Query: 401 PVLWAGMTTDNGAMAPGRAGAW 336
           P+ W     D+G   PG    W
Sbjct: 264 PIRWVAKLWDSGLRKPGVGVFW 285


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 372 QWGNGTGTSW 343
           Q+GNG  TSW
Sbjct: 274 QFGNGLETSW 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,987
Number of Sequences: 336
Number of extensions: 3595
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)