Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0284
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 232 2e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.041
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 32 0.29
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3) 30 1.2
SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4) 30 1.2
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 30 1.6
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 30 1.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 2.7
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.7
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 29 3.6
SB_39766| Best HMM Match : RVT_1 (HMM E-Value=1.8e-07) 29 3.6
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031) 29 3.6
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_42168| Best HMM Match : NolV (HMM E-Value=7.1) 29 3.6
SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11) 29 3.6
SB_9018| Best HMM Match : NolV (HMM E-Value=2.7) 29 3.6
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 29 3.6
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 4.8
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9) 28 4.8
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 6.3
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 6.3
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 6.3
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 8.3
SB_57025| Best HMM Match : Fascin (HMM E-Value=0) 27 8.3
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 8.3
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 232 bits (567), Expect = 2e-61
Identities = 108/151 (71%), Positives = 128/151 (84%)
Frame = +1
Query: 70 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 249
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 250 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 429
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 430 QALSIPTKISKGTIEIINDVHILKPGDKVGA 522
QAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 184 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 300
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1
Query: 486 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 364
I+D NS + R K+LEERG L+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 71 NSWTSTQNVSSWVPITWARNRCSRSVSRYVA 163
NSW++T + ++ I W RN C + + VA
Sbjct: 418 NSWSTTWGMDGYIKIAWKRNTCGVTRNPVVA 448
>SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3)
Length = 697
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 SRMGREDKALGSLTTSLRSSNSWTSTQNV--SSWVPITWARNRCSRSVSRYV 160
SR R ++ +SLRS SW +V SS V ++ A CS S +RYV
Sbjct: 267 SRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCS-SWTRYV 317
>SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4)
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 SRMGREDKALGSLTTSLRSSNSWTSTQNV--SSWVPITWARNRCSRSVSRYV 160
SR R ++ +SLRS SW +V SS V ++ A CS S +RYV
Sbjct: 74 SRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCS-SWTRYV 124
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 284 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 463
S + TS ++ WR K L + L SS P +TPAS+ ++ L PSL Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619
Query: 464 VLLKSS 481
+ S
Sbjct: 620 TNVPKS 625
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 518 PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 402
P P F+ C +L+ ++ ++ M RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 325 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 498
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 499 KPGDK 513
PG K
Sbjct: 2129 TPGKK 2133
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 200 AKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQS 379
+K +TWT + +RN T ++ L +P L N + Q +PV + +C++
Sbjct: 92 SKARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRA 149
Query: 380 SFPPTTPASVQRKPLSSKLFP 442
+ S ++ SS L P
Sbjct: 150 NDKLVESQSKRKSARSSNLIP 170
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 392 WAGMTTDNGAMAPGRAGAWTLFSNSL 315
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 200
VPKMFH RG+ T+A P + T +L+ R G++ +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 25 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 82
>SB_39766| Best HMM Match : RVT_1 (HMM E-Value=1.8e-07)
Length = 392
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 108 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 165
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 1960 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 2017
>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
Length = 546
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 286 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 343
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 688 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 745
>SB_42168| Best HMM Match : NolV (HMM E-Value=7.1)
Length = 414
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 223 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 280
>SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11)
Length = 887
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 709 LLKIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVYKKDDKLSKENYRPVTILSC 766
>SB_9018| Best HMM Match : NolV (HMM E-Value=2.7)
Length = 426
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 LSRMGREDKA--LGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSC 175
L ++G E+ A L +L S ++ +W S W+P+ ++ S+ R V +SC
Sbjct: 223 LLQIGAEELARPLATLYNSCITAGAWPSAWKRGDWIPVCKKDDKLSKENYRPVTILSC 280
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 28.7 bits (61), Expect = 3.6
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Frame = +2
Query: 23 REDKALGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYV----APVSCSWEKT 190
R D+ + ++ S + ST +W P++ + R + Y+ AP CS
Sbjct: 492 RTDEEIPIAAPNVTSVINNNSTSLFVAWDPLS-SEQILGRLLGYYIWYSPAPGPCSLLNN 550
Query: 191 L*CAKPSKTTWTTIQPSRNCCHTSRATL-ASCSPAETSLRSVTNCWRTKSRLQLVPVPLP 367
A + T TT PS NC + AT A+ + A+ S S++ + P
Sbjct: 551 CSSANSTSCTNTTAAPSSNCSLATNATASANTTAAQNSDCSLST--NATASANTTAAPNS 608
Query: 368 HCQSSFPPTTPAS 406
+C S T A+
Sbjct: 609 NCSLSTNATASAN 621
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 311 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 409
V +C R PVP PH ++S PT P SV
Sbjct: 2 VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 329 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 219
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
Length = 907
Score = 28.3 bits (60), Expect = 4.8
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Frame = +2
Query: 218 TWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPV------PLPHCQS 379
T TT P + H + + C + VTN + + ++V V P S
Sbjct: 338 TTTTSHPLHHV-HATIKCESPCYELQKVTFDVTNPFTSGGEFRVVLVEAQSAFPGSGSSS 396
Query: 380 SFPPTTPASVQRKPLSSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 544
+ P PA +KP+ ++ PS P +RVL+ SS ++ ++ +E+ PFST
Sbjct: 397 TTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453
>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 323 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 445
+RT+SR+ L LP+ + PP+ TP + PLS PS
Sbjct: 68 YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -2
Query: 527 SEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 378
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 SRMGREDKALGSLTTSLRSSNSWTSTQNV--SSWVPITWARNRCSRSVSRYV 160
SR R ++ +SLRS SW +V SS V ++ A CS S +R+V
Sbjct: 385 SRFSRSSSSISDSLSSLRSRASWRRLTDVLGSSMVSLSVATTPCS-SWARFV 435
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +2
Query: 101 SWVPITWARNRCSRSVSRYVAPVSCSWEKTL*C-AKPSKTTWTTIQPSRNCCHTSRATLA 277
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 278 SCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFP----PTTPA 403
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 139 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 234
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
Length = 504
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +2
Query: 242 RNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKP 421
R CCH ++ S AET+ ++ T L+L+P P P ++ P
Sbjct: 148 RQCCHQQADKISRDSEAETATKTET----PPPWLRLLPAPYPRTPTTTCALVPVGTINIT 203
Query: 422 LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELL 526
+S SL + ++ L + S +P +R LL
Sbjct: 204 VSENNARSLRRKRKSLFCIVRVSKS-NPFSRSSLL 237
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 215 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 319
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,263,275
Number of Sequences: 59808
Number of extensions: 506577
Number of successful extensions: 1634
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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