Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0284
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   275   2e-74
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    59   2e-09
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    29   3.1  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  275 bits (674), Expect = 2e-74
 Identities = 122/182 (67%), Positives = 154/182 (84%)
 Frame = +1

Query: 31  QGSWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 210
           + +WK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM+RKA+
Sbjct: 6   RSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKAL 65

Query: 211 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPA 390
           + HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P 
Sbjct: 66  RGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPP 125

Query: 391 HNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY 570
            NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSY
Sbjct: 126 QNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSY 185

Query: 571 GL 576
           GL
Sbjct: 186 GL 187


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 3/181 (1%)
 Frame = +1

Query: 43  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 222
           K+N   ++   +D+Y   FI    N+ S +   IR   + +S    GKN ++  A+    
Sbjct: 23  KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQK 82

Query: 223 DNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AH 393
            +  A  L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P   
Sbjct: 83  SDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGP 142

Query: 394 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYG 573
            +          + L +PTK+ KG I +     + K G+ +   +A +L    +    + 
Sbjct: 143 ISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFR 202

Query: 574 L 576
           L
Sbjct: 203 L 203


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +2

Query: 173 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQ 346
           CSW        P S+T +   QP+ N     R     C+P     ++S    W T S+  
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332

Query: 347 LVPVPLPHCQSSFP 388
            +P P P+  +  P
Sbjct: 333 TLPTPAPYVSTQAP 346


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 32  KALGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRS 145
           K +G++TT+LR   S +ST   S W+  +   + C+ S
Sbjct: 241 KVIGTITTALRKKASSSSTHQRSHWLEYSLDGHDCALS 278


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 32  KALGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRS 145
           K +G++TT+LR   S +ST   S W+  +   + C+ S
Sbjct: 241 KVIGTITTALRKKASSSSTHQRSHWLEYSLDGHDCALS 278


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +2

Query: 164 PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 331
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 356 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 496
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 380 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 270
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 269 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 442
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 443 SLPKFQRV 466
            L  F ++
Sbjct: 511 LLQNFLKL 518


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 319 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 468
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 330 VLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 181
           +L     DL E S   HE+   LDVW++ L      Q +  G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 233 QPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPVPLPHCQSSFPPTTPAS 406
           Q  +N C ++ +     S  + S ++ ++C+   T + +Q  P  +P C+ S    TPA+
Sbjct: 90  QSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148

Query: 407 VQRKP 421
           VQ  P
Sbjct: 149 VQCVP 153


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 341 LQLVPVPLPHCQSSFPPTTPASVQRKPL 424
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 203 KPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 382
           K S  T   +    N C T + +  +C      + +    W +++  Q  P PLP C+S+
Sbjct: 586 KSSHCTGNPVSIDCNGCPTPKRSGINCDNRMAEVNNQAGRWSSEATSQ--PAPLP-CKSA 642

Query: 383 FPPTTPASVQRKPLS 427
             PT  +S    P S
Sbjct: 643 -NPTEDSSQDAPPTS 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,470
Number of Sequences: 27780
Number of extensions: 352003
Number of successful extensions: 1358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)