Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0284
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 213 5e-56
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 213 5e-56
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 210 7e-55
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 47 1e-05
At3g09000.1 68416.m01053 proline-rich family protein 33 0.10
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 32 0.24
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 1.3
At3g50610.1 68416.m05534 hypothetical protein 29 1.7
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 1.7
At1g33410.1 68414.m04136 expressed protein 29 1.7
At5g04470.1 68418.m00445 expressed protein 29 2.2
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 2.2
At4g00770.1 68417.m00107 expressed protein 29 2.9
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote... 29 2.9
At5g13260.1 68418.m01523 expressed protein 28 3.9
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 5.1
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 5.1
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 5.1
At3g56700.1 68416.m06307 male sterility protein, putative simila... 27 6.8
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 27 9.0
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 27 9.0
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 9.0
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 9.0
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 213 bits (521), Expect = 5e-56
Identities = 103/180 (57%), Positives = 134/180 (74%), Gaps = 2/180 (1%)
Frame = +1
Query: 43 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 222
K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H
Sbjct: 10 KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69
Query: 223 DN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHN 396
+N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ N
Sbjct: 70 ENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN 129
Query: 397 TGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 576
TGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGL
Sbjct: 130 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 189
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 213 bits (521), Expect = 5e-56
Identities = 103/180 (57%), Positives = 134/180 (74%), Gaps = 2/180 (1%)
Frame = +1
Query: 43 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 222
K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H
Sbjct: 10 KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69
Query: 223 DN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHN 396
+N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ N
Sbjct: 70 ENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN 129
Query: 397 TGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 576
TGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGL
Sbjct: 130 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 189
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 210 bits (512), Expect = 7e-55
Identities = 102/177 (57%), Positives = 131/177 (74%), Gaps = 2/177 (1%)
Frame = +1
Query: 52 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN- 228
Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D
Sbjct: 14 YDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKT 73
Query: 229 -NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGL 405
N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 GNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGL 133
Query: 406 GPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 576
P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGL
Sbjct: 134 DPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGL 190
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +1
Query: 64 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 237
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 238 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 414
+ K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149
Query: 415 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 576
+ L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 33.5 bits (73), Expect = 0.10
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 6/181 (3%)
Frame = +2
Query: 11 SRMG--REDKALGSLTTSLRSSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWE 184
SR+G RED G+ SS+S + SS + SRS SR P S
Sbjct: 117 SRLGNCREDIVSGNNNKPQTSSSSVAGLRRPSS--------SGSSRSTSRPATPTRRSTT 168
Query: 185 KTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPV-- 358
T ++P T + SR+ TSRATL + ++ T + S P
Sbjct: 169 PTTSTSRPVTTRASN---SRSSTPTSRATLTAARATTSTAAPRTTTTSSGSARSATPTRS 225
Query: 359 -PLPHCQSSFPPTT-PASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 532
P P SS P + PA+ R+P S+ PS+ V K+ + TS SP L K
Sbjct: 226 NPRPSSASSKKPVSRPATPTRRP-STPTGPSI-----VSSKAPSRGTSPSPTVN-SLSKA 278
Query: 533 P 535
P
Sbjct: 279 P 279
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 32.3 bits (70), Expect = 0.24
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +2
Query: 224 TTIQPSRNCC---HTSRATLASCSPAETSLRSVTNCWRTK-SRLQL-VPVPLPHCQSSFP 388
++IQP RN +S + +S S ++ +SV + R++ S QL V + +P P
Sbjct: 5 SSIQPPRNFVLAKDSSTGSSSSSSSSQVKEQSVEDVSRSQPSGSQLDVSIQIP------P 58
Query: 389 PTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 547
TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 59 KPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 353 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 532
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 533 P 535
P
Sbjct: 118 P 118
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 214 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 390
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 391 HNTGLGPEK 417
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 226 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 324
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 125 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 253
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 359 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 475
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 2.2
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -2
Query: 539 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAM 360
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 359 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 225
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At4g00770.1 68417.m00107 expressed protein
Length = 440
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 41 GSLTTSLRSSNSWTSTQNVSSWVPITWARN 130
GS TTS S +SW+ S ++P +W N
Sbjct: 130 GSSTTSGTSCSSWSDLDFTSEFLPSSWGSN 159
>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 670
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 71 NSWTSTQNVSSWVPITWARNRCSRSV 148
NSW +T N W ++ RNR +R V
Sbjct: 49 NSWNTTTNPCQWTGVSCNRNRVTRLV 74
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 175 ARYWSHVARYGSAASVASPRYRH 107
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 377 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 264
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 486 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 379
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 486 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 379
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 236 PSRNCCHTSRATLASCSPAETSLRSVTN 319
P R HT+R SC ETS +VT+
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTS 60
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 127 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGD 297
+Q Q +R +L ++ +++ KNT++ KAI+ E L P +KG ++F + D
Sbjct: 76 KQFQDLRRTLPDTTKLIVAKNTLVFKAIE-----GTKWEALKPCMKGMNAWLFVQTD 127
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 288 GEHEANVALDVWQQFLEGWIVVQVVFDGFA 199
G HEA+ L W+ + GW + F GFA
Sbjct: 83 GNHEASNYL--WELYYGGWAATNIYFLGFA 110
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 220 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENK 333
+ N P ++++ PHI VG + T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 393 VGGNDD*QWGNGTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 247
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,368
Number of Sequences: 28952
Number of extensions: 342286
Number of successful extensions: 1132
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -