Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0283
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    29   0.36 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   0.62 
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    27   1.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   1.9  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    26   3.3  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   4.4  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   5.8  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   7.7  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 35  ESSGNLANLNTGLRRLPCFVSKSTTLITPSLPGNVRIILP 154
           E SGN        + L   VSK+ TLI P +   + +ILP
Sbjct: 614 EYSGNSRQKEESAQLLKLLVSKARTLIKPYIQSIIHVILP 653


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 223 LTSSSWRARPHQ--RGQSAPAAMETWKDYPHVTRQGWSDQSRGFGHEAWKSA 74
           +   +++ RP    RGQS PA++ + + +    RQ   +++R FG   WK A
Sbjct: 118 IPKQNFKVRPLSPLRGQS-PASLRSEESFTLKERQNAINKTRAFGMRLWKPA 168


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 338 NGLSSKDGSGRAVSERPIRKW 400
           N L+SKD  G+ +  R +RKW
Sbjct: 413 NRLTSKDKDGKRLGHRGVRKW 433


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 185 RTISPRCNGNL----EGLSARYPARME*SESWIWTRSMEVCGDL 66
           +T+SP+  G L    + L +RY A M   + W W+  ++ C DL
Sbjct: 300 KTLSPQRIGFLTPADKSLHSRYIAEMNVGKRWQWSDLLKSCLDL 343


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 193 HQRGQSAPAAMETWKDYPHVTRQGWSDQSRGFGH 92
           H     +   +   K++PHVT  G SDQ+ G  H
Sbjct: 63  HHHADHSGGNLNLKKEFPHVTIYGGSDQN-GVSH 95


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 111 RVVDLDTKHGSLRRPVFKLARLPLDSAHE 25
           RV +    +GSL + +F L R PL+ A E
Sbjct: 360 RVAEASIPYGSLYQEMFGLVRRPLECATE 388


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 116 TPSLPGNVRIILPS 157
           TP  PGN RI++PS
Sbjct: 754 TPMAPGNSRIVMPS 767


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 180 NQPPLQWKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDS 34
           +Q PL+ K GR++ T    +G I +  ++ +  S++ P+F L   P D+
Sbjct: 77  HQGPLKGKWGRVVETNKYTNG-ITIEGVNVR--SVKVPIFLLRNKPEDN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,869
Number of Sequences: 5004
Number of extensions: 45283
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)