Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0283
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    29   1.9  
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214...    29   2.5  
12_01_0262 - 1921625-1921792,1922023-1922163,1922942-1923344,192...    28   3.3  
11_01_0264 - 2002884-2003051,2003313-2003453,2004211-2004613,200...    28   3.3  
11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872     27   5.8  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    27   5.8  
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    27   7.6  
06_01_1043 - 8190268-8190624,8190858-8191021,8191112-8191226,819...    27   7.6  

>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 162 WKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDS 34
           W+  R +R L   DG +   D+D + GS  + +  L   PLDS
Sbjct: 320 WRKSRSMRILAIDDGYVSYTDIDFRLGS--KSIIVLPTFPLDS 360


>03_05_0674 +
           26619579-26619658,26620020-26620746,26620999-26621486,
           26621746-26621902,26621975-26621998
          Length = 491

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 267 YLHTLQTRSKWLSTSSPPQVGELVLIKED--NQPPLQWKLGRII 142
           Y++    R   ++TSS  Q+    ++ E   N+ P+ WK+G +I
Sbjct: 46  YVNFYMFRDDVIATSSQLQIDNRYILSEQTPNRAPVDWKMGHLI 89


>12_01_0262 -
           1921625-1921792,1922023-1922163,1922942-1923344,
           1923510-1923692,1923806-1924056,1925069-1925674
          Length = 583

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 169 AAMETWKDYPHVTRQGWSDQSRGF--GHEAWKSAETCVQVSQVA 44
           A  E WK      R GWSD+  GF  G + W S ETC     +A
Sbjct: 386 AEAEYWKKSEGY-RMGWSDEILGFDCGGQQWVS-ETCFPAGTLA 427


>11_01_0264 -
           2002884-2003051,2003313-2003453,2004211-2004613,
           2004778-2004960,2005074-2005324,2006323-2006928
          Length = 583

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 169 AAMETWKDYPHVTRQGWSDQSRGF--GHEAWKSAETCVQVSQVA 44
           A  E WK      R GWSD+  GF  G + W S ETC     +A
Sbjct: 386 AEAEYWKKSEGY-RMGWSDEILGFDCGGQQWVS-ETCFPAGTLA 427


>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
          Length = 453

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 221 EDVESHLERVWRVWR*DLVH 280
           +D  +H +R W  WR  L+H
Sbjct: 397 QDANAHRDRTWNKWRASLIH 416


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 241 GAGLEGMEIGFGPQSPKTLRESLDELKTLKS**WPIIKRWLRE 369
           G G    E GFGP +P + R S   +    S  WP    W RE
Sbjct: 182 GGGSGFFEAGFGPPTPGSGRSSCSGVAARGS--WPAWACWRRE 222


>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 250 NPLQMAFHILTSSSWRARPHQRGQSAPAAMET 155
           NP+++++ +   SS+  + H RG S PA  +T
Sbjct: 452 NPMKLSYLVGYGSSYPQQVHHRGASIPADAKT 483


>06_01_1043 -
           8190268-8190624,8190858-8191021,8191112-8191226,
           8192905-8192958,8194064-8194225,8194311-8194403,
           8194581-8194988,8195112-8195306
          Length = 515

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 280 VDQILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPA 167
           VD IL     NPL+M++ +   S +  R H RG S P+
Sbjct: 398 VDYILGD---NPLRMSYMVGYGSRYPLRIHHRGSSLPS 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,890
Number of Sequences: 37544
Number of extensions: 366952
Number of successful extensions: 1209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)