Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0283
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 29 6.1
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 29 6.1
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 29 6.1
BC096296-1|AAH96296.1| 427|Homo sapiens COL8A2 protein protein. 29 6.1
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 29 6.1
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 29 6.1
BT007349-1|AAP36013.1| 606|Homo sapiens nucleoporin 98kDa protein. 29 8.1
BC095419-1|AAH95419.1| 946|Homo sapiens sorting nexin 14 protein. 29 8.1
BC012906-1|AAH12906.1| 606|Homo sapiens NUP98 protein protein. 29 8.1
AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin prot... 29 8.1
AF116074-1|AAF19342.1| 420|Homo sapiens ADIR2 protein. 29 8.1
AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor s... 29 8.1
AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor p... 29 8.1
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 97 GLPGPSGITIPGKPGAQGVPGP 118
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 116 GLPGPSGITIPGKPGAQGVPGP 137
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 116 GLPGPSGITIPGKPGAQGVPGP 137
>BC096296-1|AAH96296.1| 427|Homo sapiens COL8A2 protein protein.
Length = 427
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 162 GLPGPSGITIPGKPGAQGVPGP 183
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 162 GLPGPSGITIPGKPGAQGVPGP 183
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 287 GLCGPNPISIPSKPAPNGFPHP 222
GL GP+ I+IP KP G P P
Sbjct: 164 GLPGPSGITIPGKPGAQGVPGP 185
>BT007349-1|AAP36013.1| 606|Homo sapiens nucleoporin 98kDa protein.
Length = 606
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 83 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 119
>BC095419-1|AAH95419.1| 946|Homo sapiens sorting nexin 14 protein.
Length = 946
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = -3
Query: 372 ALPEPSFDDRPLSALKRFQLIQALSQRFWTLWTKSYLHTLQTRSKWLSTSSPPQVGELVL 193
A P+ + + K ++ +++ + F K H + S+ L+ P GE
Sbjct: 633 AFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSNSQLLADFLSPNGGETQF 692
Query: 192 IKEDNQPPLQWKLGRIIRTLPGK 124
+ D P LG+II+++PGK
Sbjct: 693 L--DKLLP-DVNLGKIIKSVPGK 712
>BC012906-1|AAH12906.1| 606|Homo sapiens NUP98 protein protein.
Length = 606
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 83 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 119
>AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin protein.
Length = 1800
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 1277 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 1313
>AF116074-1|AAF19342.1| 420|Homo sapiens ADIR2 protein.
Length = 420
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 83 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 119
>AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor splice
variant 1 protein.
Length = 1638
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 1277 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 1313
>AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor
protein.
Length = 1712
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 273 KSYLHTLQTR---SKWLSTSSPPQVGELVLIKEDNQP 172
+ Y+ L+ R S+WLS ++ PQ+ E V + + N P
Sbjct: 1277 REYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSP 1313
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,816,080
Number of Sequences: 237096
Number of extensions: 1914777
Number of successful extensions: 4891
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4885
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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