Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0283
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    61   3e-10
AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical ...    47   8e-06
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    42   3e-04
Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical p...    29   2.2  
U64859-4|AAC69094.1|  145|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AJ310669-1|CAC33821.1|  139|Caenorhabditis elegans cystatin prot...    29   2.2  
AF100663-6|AAC68983.1|  139|Caenorhabditis elegans Cystatin-like...    29   2.2  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   5.1  
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    27   6.8  
AL032627-10|CAB63356.2|  248|Caenorhabditis elegans Hypothetical...    27   6.8  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    27   9.0  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
 Frame = -3

Query: 330  LKRFQLIQALSQRFWTLWTKSYLHTLQTRSKWL-----STSSPPQVGELVLIKEDNQPPL 166
            ++  Q   A+ +  W +W K+YL  L+   K         +  P VG++VLI + N P  
Sbjct: 1038 IEALQSSVAIIEDIWKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRN 1097

Query: 165  QWKLGRIIRTLPGKDGVIRVVDLDTKHG-SLRRPVFKLARLPLDSAHEE 22
             WK+G+I  T P  DG++R   L T  G ++RRP+  +  L ++    E
Sbjct: 1098 NWKMGKITETKPSTDGILREAHLLTATGRTIRRPINLITPLEIEEIQHE 1146


>AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical
           protein Y20F4.8 protein.
          Length = 345

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
 Frame = -3

Query: 468 VLNSRPLCPLSSDPSDFEPLTAGHFLIGRSLTALPE------PSFDDRPLSALKR--FQL 313
           ++NSRP+ P   DP D   +    F+   +    PE       +        L R   + 
Sbjct: 63  IINSRPITPNKKDPDDAPAIRPADFISYNAQLTRPEHHKSIFEAIQGGESGKLTRQLMEK 122

Query: 312 IQALSQRFWTLWTKSYLHTLQ--TRSKWLSTSSPPQVGELVLIKEDNQPPLQWKLGRIIR 139
           ++ + ++ W  ++KSY+  L+     K  ++   P++G++VL+ +   P   W + RI+ 
Sbjct: 123 LRIIKEQLWKEFSKSYIAALRDVEHHKKATSRLKPEIGQVVLVFQKLLPRYAWPMARIVE 182

Query: 138 -TLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDSAHEEVQ 16
                 DG ++ V +      + +PV  L  +PL++    +Q
Sbjct: 183 LNRKNPDGEVQSVMVKMGKRIVEKPVNLL--IPLENTGIRIQ 222


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
 Frame = -3

Query: 468  VLNSRPLCPLSSDPSDFEPLTAGHFLIGRSLTALPEPS--FDDRPLSALKR----FQLIQ 307
            ++NSRPL P  + P D   +    FL    L  +P+ S  FD    +  +R       ++
Sbjct: 1953 MINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIRFDPTRSNTEQRTRDHLNKLE 2012

Query: 306  ALSQRFWTLWTKSYLHTLQT---RSKWLSTSSPPQVGELVLIKED 181
             +    W LW+  YL TL+    ++K  ST   P++G++VLI  D
Sbjct: 2013 GVLNELWKLWSLRYLSTLRELKHKNKKCSTLL-PKIGQVVLIVTD 2056


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
 Frame = -3

Query: 468  VLNSRPLCPLSSDPSDFEPLTAGHFLIGRSLTALPEPS--FDDRPLSALKR----FQLIQ 307
            ++NSRPL P  + P D   +    FL    L  +P+ S  FD    +  +R       ++
Sbjct: 1953 MINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIRFDPTRSNTEQRTRDHLNKLE 2012

Query: 306  ALSQRFWTLWTKSYLHTLQT---RSKWLSTSSPPQVGELVLIKED 181
             +    W LW+  YL TL+    ++K  ST   P++G++VLI  D
Sbjct: 2013 GVLNELWKLWSLRYLSTLRELKHKNKKCSTLL-PKIGQVVLIVTD 2056


>Z46787-13|CAA86748.1|  281|Caenorhabditis elegans Hypothetical
           protein C16C10.10 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 184 LFDEDELSNLRR*GCGKPFGAGLEGME--IGFGPQSPKTLR 300
           LF++ E  N R+ GCG+      +G E  IG   QSPK LR
Sbjct: 95  LFEKVEKINHRKSGCGRLAVKDPDGHEFKIGKADQSPKVLR 135


>U64859-4|AAC69094.1|  145|Caenorhabditis elegans Hypothetical
           protein R09F10.5 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 132 PGKDGVIRVVDLDTKHGSLRRPVFKLAR-LPLDSAHEEV 19
           PGK  ++ +V  DTKH  +   V ++ R LP D  +E +
Sbjct: 48  PGKVQIMPIVQRDTKHKGVSETVQEIIRELPNDEQYERI 86


>AJ310669-1|CAC33821.1|  139|Caenorhabditis elegans cystatin
           protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 SFQVSIAAGADCPL**GRALQLEEVRMWKAIWSGF 251
           S Q S    A+CPL  G   +L +V +W+  W  F
Sbjct: 88  SVQASQVTAANCPLKSGGKRELYKVSIWEKPWENF 122


>AF100663-6|AAC68983.1|  139|Caenorhabditis elegans Cystatin-like
           protease inhibitorprotein 2 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 SFQVSIAAGADCPL**GRALQLEEVRMWKAIWSGF 251
           S Q S    A+CPL  G   +L +V +W+  W  F
Sbjct: 88  SVQASQVTAANCPLKSGGKRELYKVSIWEKPWENF 122


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 287  GLCGPNPISIPSKPAPNGFPHP 222
            G  GPN  S P+KP+PNG   P
Sbjct: 978  GPSGPNGPSDPNKPSPNGPSDP 999



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 278  GPNPISIPSKPAPNGFPHP 222
            GPN  S P+KP PNG  +P
Sbjct: 1368 GPNGSSDPNKPGPNGPSNP 1386



 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 278  GPNPISIPSKPAPNGFPHP 222
            GPN  S P+KP PNG   P
Sbjct: 1172 GPNESSDPNKPGPNGPNEP 1190



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 278  GPNPISIPSKPAPNGFPHP 222
            GPN  S P+KP PNG   P
Sbjct: 1214 GPNEPSDPNKPGPNGSNGP 1232


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   GAAGAELLHVLNPAATWLT*TQVSADFHASC 95
           G+ G ELL    PA  WL  + + A  H  C
Sbjct: 256 GSGGRELLFQAGPANQWLLNSYLEAAIHPHC 286


>AL032627-10|CAB63356.2|  248|Caenorhabditis elegans Hypothetical
           protein Y41C4A.7 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 279 WTKSYLHTLQTRSKWLSTSSPPQVGELVLIKEDNQP 172
           W K    T Q +   L TS    V E V  +EDN P
Sbjct: 165 WEKEMKKTSQEKKSSLETSEVSSVNEFVDAEEDNFP 200


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -3

Query: 444 PLSSDPSDFEPLTAGHFLIGRSLTALPEPSFDDRP---LSALKRFQLIQALSQRFWTLWT 274
           PL+SDPS F+P+   H+++  ++  + +P  +       S   + Q I   S +   L  
Sbjct: 167 PLTSDPSKFQPI---HYVLNITIRDVRKPVLEGHMQLFASTKDQVQAISLHSVKIHNLEN 223

Query: 273 KSYLHTLQTRS-KWLSTSSPPQVGELV 196
           +  +H +   + + +  S   Q+ +L+
Sbjct: 224 RDRIHVVNCNTGETICVSRVHQIDDLI 250


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 271  ILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPAAM 161
            I SP PP PLQ   HI TS    +RP     + P+ +
Sbjct: 4438 ISSPIPPEPLQ--DHITTSQKLISRPSIEISNVPSRL 4472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,660
Number of Sequences: 27780
Number of extensions: 264708
Number of successful extensions: 779
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)