Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0283
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10330.1 68417.m01698 glycine-rich protein 29 1.2
At4g09740.1 68417.m01599 glycosyl hydrolase family 9 protein sim... 29 2.1
At1g23210.1 68414.m02902 glycosyl hydrolase family 9 protein sim... 29 2.1
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 28 2.8
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 28 2.8
At4g23560.1 68417.m03394 glycosyl hydrolase family 9 protein sim... 28 3.7
At3g51490.1 68416.m05639 sugar transporter family protein simila... 28 3.7
At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein sim... 28 3.7
At4g21410.1 68417.m03093 protein kinase family protein contains ... 27 6.4
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr... 27 6.4
At1g54310.2 68414.m06192 expressed protein 27 6.4
At1g54310.1 68414.m06191 expressed protein 27 6.4
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ... 27 6.4
At5g01790.1 68418.m00098 expressed protein 27 8.5
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end... 27 8.5
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 27 8.5
At1g07745.1 68414.m00836 DNA repair family protein contains simi... 27 8.5
>At4g10330.1 68417.m01698 glycine-rich protein
Length = 130
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 223 GCGKPFGAGLEGMEIGFGPQSP 288
GCG FGAGL G +GFGP P
Sbjct: 38 GCGFGFGAGLIG-GVGFGPGVP 58
>At4g09740.1 68417.m01599 glycosyl hydrolase family 9 protein
similar to endo-beta-1,4-glucanase; cellulase GI:1655543
from [Capsicum annuum]
Length = 478
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 250 NPLQMAFHILTSSSWRARPHQRGQSAPA 167
NPL+M++ + + + +PH RG S P+
Sbjct: 379 NPLKMSYMVGFGTKYPTQPHHRGSSLPS 406
>At1g23210.1 68414.m02902 glycosyl hydrolase family 9 protein
similar to endo-1,4-beta-glucanase GB:CAA67157
GI:2440035 from (Arabidopsis thaliana)
Length = 489
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -2
Query: 280 VDQILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPAAMETWKDYPHVTRQGWSDQSRG 101
VD IL NP++M++ + S + + H RG S P+ ++ H R G D SR
Sbjct: 383 VDYILGD---NPMKMSYMVGYGSRFPQKIHHRGSSVPSVVD------HPDRIGCKDGSRY 433
Query: 100 F 98
F
Sbjct: 434 F 434
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 275 PNPISIPSKPAPNGFPHPH 219
P+P P P P+ +PHPH
Sbjct: 57 PSPYPHPHPPPPSPYPHPH 75
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 275 PNPISIPSKPAPNGFPHPH 219
P S P +P P+ +PHPH
Sbjct: 46 PPHFSPPHQPPPSPYPHPH 64
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 280 VDQILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPAAMETW 152
VD S +P NPL M S + + R + AP+ TW
Sbjct: 84 VDDSFSDFPANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTW 126
>At4g23560.1 68417.m03394 glycosyl hydrolase family 9 protein
similar to cellulase GI:1039431 from [Phaseolus
vulgaris]
Length = 479
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 250 NPLQMAFHILTSSSWRARPHQRGQSAPA 167
NP++M++ + + + +PH RG S P+
Sbjct: 379 NPMKMSYMVGFGTKYPTQPHHRGSSLPS 406
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 32 AESSGNLANLNTGLRRLPCFVSKSTTLITPSLP----GNVRIILPSFHCSGG*LSSLMRT 199
AES+ L + T L LPC + +L+ ++P V +++ S GG +++L+ T
Sbjct: 554 AESASLLISALTTLLMLPCILVSMRSLMLSTIPILILSLVTLVIGSLVNLGGSINALIST 613
Query: 200 SSPT 211
+S T
Sbjct: 614 ASVT 617
>At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein
similar to GB:AAB65156 and GB:AAA96135
Length = 484
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 250 NPLQMAFHILTSSSWRARPHQRGQSAPA 167
NP++M++ + SS++ R H RG S P+
Sbjct: 383 NPMKMSYMVGFSSNFPKRIHHRGSSLPS 410
>At4g21410.1 68417.m03093 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 679
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 215 GGEDVESHLERVWRVWR*DLV 277
G ED E L VWR WR D +
Sbjct: 567 GDEDAEDLLSWVWRSWREDTI 587
>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1032
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 282 LWTKSYLHTLQTRSKWLSTSSPPQVGEL 199
LWT +YL L L+ S PP +G L
Sbjct: 119 LWTLTYLTNLNLGQNVLTGSLPPAIGNL 146
>At1g54310.2 68414.m06192 expressed protein
Length = 454
Score = 27.1 bits (57), Expect = 6.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 219 PPQVGELVLIKEDNQPPLQWKL 154
PPQ G++V++ + + P+ W L
Sbjct: 82 PPQTGDVVIVADGTENPIGWGL 103
>At1g54310.1 68414.m06191 expressed protein
Length = 245
Score = 27.1 bits (57), Expect = 6.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 219 PPQVGELVLIKEDNQPPLQWKL 154
PPQ G++V++ + + P+ W L
Sbjct: 65 PPQTGDVVIVADGTENPIGWGL 86
>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 894
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 158 NLEGLSARYPARME*SESWIWTRSMEVCG 72
NLE L YP+R + TRS +VCG
Sbjct: 272 NLEVLGVPYPSRQNGCKVVFTTRSRDVCG 300
>At5g01790.1 68418.m00098 expressed protein
Length = 188
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 246 RSKWLSTSSPPQVGELVLIKED 181
++K LS SSPP + E VLI E+
Sbjct: 122 KAKKLSASSPPSLSERVLIDEN 143
>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
endo-1,4-beta-glucanase precursor - Fragariax ananassa,
PID:g3549291 A short intron was annotated between exons
4 and 5 to circumvent a frameshift. The frameshift may
be artificial due to a sequencing error, or
alternatively is genuine suggesting a truncated protein
or pseudogene.
Length = 495
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 280 VDQILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPAAMETWKDYPHVTRQGWSDQS 107
VD IL NP++M++ I + + + H RG S+P+ T P +GW+ S
Sbjct: 388 VDYILGD---NPMKMSYMIGYGNRYPRQIHHRGASSPSI--TTHPTPVKCSEGWNSFS 440
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -2
Query: 280 VDQILSPYPPNPLQMAFHILTSSSWRARPHQRGQSAPAAMETWKDYPH 137
+D+ P PP+P H L SS +PH R P + PH
Sbjct: 76 MDKEKVPPPPSP-HPPLHSLPSSKPEVKPHPRPTGNPICPVSHPSQPH 122
>At1g07745.1 68414.m00836 DNA repair family protein contains
similarity to Swiss-Prot:O75771 DNA repair protein RAD51
homolog 4 (R51H3) (TRAD) [Homo sapiens]
Length = 200
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 184 GQSAPAAMETWKDYPHVTRQ 125
G++ PA ETWK PH + Q
Sbjct: 167 GKTKPALGETWKSIPHPSGQ 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,969,242
Number of Sequences: 28952
Number of extensions: 268575
Number of successful extensions: 813
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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