Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0280
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    58   7e-10
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   1.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   7.7  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   7.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 57.6 bits (133), Expect = 7e-10
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +2

Query: 23  ILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 133
           +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 415 LASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 399 THYRANWVPGPPSSXXXXXXXFLKIGSSLYEC 304
           T+Y +NW P P  +       +LK  S L EC
Sbjct: 491 TYYMSNWEPPPKETDRNRWKAWLKGYSDLLEC 522


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 22  YTKNSIFYNIYWSKYNIFSTTFFR 93
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 28  KNSIFYNI--YWSKYNIFSTTFFRFSWNTSTIFRLSRLIY 141
           KNS+  ++  Y++K   +  +F  +    +TIF+ S L+Y
Sbjct: 27  KNSVIPDVIDYYNKGRQYYQSFVVYKATANTIFQFSYLLY 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,449
Number of Sequences: 5004
Number of extensions: 22953
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)