Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0280
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   69   2e-12
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   2e-12
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.002
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.009
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   3.3  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)                   27   5.7  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 42/105 (40%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = +2

Query: 29  KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXX 208
           KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D                         
Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIF 174

Query: 209 XXXXXXXNQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 331
                   + +   +  N  S   S+E  Q  PPA H+YNELP +
Sbjct: 175 VVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 42/105 (40%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = +2

Query: 29  KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXX 208
           KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D                         
Sbjct: 29  KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIF 88

Query: 209 XXXXXXXNQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 331
                   + +   +  N  S   S+E  Q  PPA H+YNELP +
Sbjct: 89  VVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 259
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 260 LPS---SIE*YQNLPPAEHSYNELPIL 331
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 259
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 260 LPS---SIE*YQNLPPAEHSYNELPIL 331
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 259
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 260 LPS---SIE*YQNLPPAEHSYNELPIL 331
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 259
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 260 LPS---SIE*YQNLPPAEHSYNELPIL 331
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 259
           HFLGLAG PRRYSD+ D                                 + +   +  N
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60

Query: 260 LPS---SIE*YQNLPPAEHSYNELPIL 331
             S   S+E  Q  PPA H+YNELP +
Sbjct: 61  TGSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 83  HFLGLAGIPRRYSDYPD 133
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 ISHHQLNDIKIYHQQNIHIMNYQF 329
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 62  NITFFPQHFLGLAGIPRRY 118
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
          Length = 596

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 117 YRRGIPAKPKKCCGKNVIFTP 55
           Y R I A+ K+C GKNV+  P
Sbjct: 120 YFRAIIARCKECLGKNVVLIP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,287
Number of Sequences: 59808
Number of extensions: 149573
Number of successful extensions: 245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)