Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0275
         (409 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q46634 Cluster: Amylovoran biosynthesis glycosyltransfe...    33   1.7  
UniRef50_Q4TBN6 Cluster: Chromosome undetermined SCAF7104, whole...    32   5.1  
UniRef50_Q9N3Z7 Cluster: Putative uncharacterized protein Y39H10...    31   8.9  

>UniRef50_Q46634 Cluster: Amylovoran biosynthesis
           glycosyltransferase amsD; n=1; Erwinia amylovora|Rep:
           Amylovoran biosynthesis glycosyltransferase amsD -
           Erwinia amylovora (Fire blight bacteria)
          Length = 351

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 286 SYHSYDITIY*QRGGRPYYVVLG-INARQTKAFYR--TMFTCTRWTITTR 146
           S H+YD+T+Y    G PYY V   ++ RQ K+  R   +F   R+   TR
Sbjct: 29  SNHNYDVTLYSLNSGEPYYPVDNKVSIRQPKSSMRLFKLFEFIRYAKNTR 78


>UniRef50_Q4TBN6 Cluster: Chromosome undetermined SCAF7104, whole
            genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF7104, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1609

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 140  QIACCYSPPCAREHCSIKCLCLS 208
            Q+AC  +PPC  + C + C+C S
Sbjct: 1213 QLACRRAPPCLNDFCRLGCICSS 1235


>UniRef50_Q9N3Z7 Cluster: Putative uncharacterized protein
           Y39H10A.5; n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein Y39H10A.5 - Caenorhabditis
           elegans
          Length = 120

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 110 SLIDVLVVFPQIACCYSPPCAREHCSIKC--LCLSS 211
           S+  +L+VF  +  C + P A+  CS++C  LC+ S
Sbjct: 39  SIFHILIVFTLLNSCSTEPHAKTKCSLECYALCMQS 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,457,090
Number of Sequences: 1657284
Number of extensions: 6499133
Number of successful extensions: 11337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11336
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)