Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0275
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   0.49 
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    25   4.5  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    24   7.9  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 131 VFPQIACCYSPPCAREH-C-SIKC 196
           +F  +  CYSP CA++H C SI C
Sbjct: 546 IFTLLTHCYSPTCAKDHPCYSISC 569


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 226 VLGINARQTKAFYRTMFTCTRWTITTRDLRKNDQNI 119
           ++ I  +    F R+  TC R ++  ++L + D NI
Sbjct: 7   LIPIATKSVSPFLRSSITCRRISMGRKELSEKDSNI 42


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 185 NNVHVHTVDYNNTRFAEKRPEH 120
           N V+ H +  N+TR  E RP H
Sbjct: 182 NEVYRHFLYINSTRIYEDRPSH 203


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 297 FFSGGIF-LKNVKILHTLNGES 359
           FFS G F L N  + H+LNG+S
Sbjct: 110 FFSEGSFNLPNSNMSHSLNGDS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,354
Number of Sequences: 5004
Number of extensions: 29028
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)