Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0275
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_17903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 238 PYYVVLGINARQTKAFYRTMF--TCTRWTITTRDLRKNDQNINQTTQFETAISEP 80
           P+ V++      T+     +F     RWT   R   ++ QN+NQT  F     +P
Sbjct: 28  PHVVIVNFFYENTQIVVAILFEKVLPRWTEGERTYPQDTQNVNQTHNFNLLFFDP 82


>SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 56  DIIYRVLIRF*YSRFKLCSLIDVLVVFPQIACCYSP 163
           ++I R +IRF YS++ +  LID+     Q+     P
Sbjct: 213 EVINREIIRFDYSKYSIDKLIDIRAKAMQVISVEGP 248


>SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 396 YRFMRRIYDRKYQTLRSKYEGF*RSLKIYHQRRRL 292
           Y    R+YDR+Y+    +Y  + R  ++Y ++ RL
Sbjct: 99  YARQYRLYDRQYRLYARQYRLYDRQYRLYARQYRL 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,003
Number of Sequences: 59808
Number of extensions: 217486
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)