Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0275
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024770-2|AAF59481.2|  120|Caenorhabditis elegans Hypothetical ...    31   0.32 
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      29   1.3  
AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U42839-8|AAC69016.1|  189|Caenorhabditis elegans Osmotic avoidan...    26   9.1  
AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical...    26   9.1  

>AC024770-2|AAF59481.2|  120|Caenorhabditis elegans Hypothetical
           protein Y39H10A.5 protein.
          Length = 120

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 110 SLIDVLVVFPQIACCYSPPCAREHCSIKC--LCLSS 211
           S+  +L+VF  +  C + P A+  CS++C  LC+ S
Sbjct: 39  SIFHILIVFTLLNSCSTEPHAKTKCSLECYALCMQS 74


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 226  VLGINARQTKAFYRTMFTCTRWTITTRDLRKNDQNI 119
            VLG N RQ KAFY  +    RW +  +DL ++   +
Sbjct: 1311 VLGFNPRQRKAFYNAVM---RWGMPPQDLTQSSWQV 1343


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 226  VLGINARQTKAFYRTMFTCTRWTITTRDLRKNDQNI 119
            VLG N RQ KAFY  +    RW +  +DL ++   +
Sbjct: 1311 VLGFNPRQRKAFYNAVM---RWGMPPQDLTQSSWQV 1343


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 226  VLGINARQTKAFYRTMFTCTRWTITTRDLRKNDQNI 119
            VLG N RQ KAFY  +    RW +  +DL ++   +
Sbjct: 1311 VLGFNPRQRKAFYNAVM---RWGMPPQDLTQSSWQV 1343


>AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical
           protein F45D11.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 338 SYFERRVWYLRSYILRIKR 394
           +YF R+VW LR+  LRIK+
Sbjct: 185 NYFSRQVWDLRNVKLRIKK 203


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = -1

Query: 328 TFFKNIPPEKKAT*SYHSYDITIY*QRGG-RPYYVVLGINARQTKAFYRTMFTCTRWTIT 152
           T  KN P   KA   Y + +  +  Q  G +P  V++G      K +YR +   T W   
Sbjct: 696 TITKNPPAALKA---YQARNTWMQQQLTGLKPKDVLVGFEPNDVKQYYRFLLAATHWLWK 752

Query: 151 TRDLRKNDQNINQTTQFETAISEPN*H 71
            R  +     I  +   + AI   + H
Sbjct: 753 VRKTKMIVNVIASSCTQQIAIGNASGH 779


>U42839-8|AAC69016.1|  189|Caenorhabditis elegans Osmotic avoidance
           abnormal protein11 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 143 IACCYSPPCAREHCSIKCLCLSSINS*HNIIRTPA 247
           +A C +P C   HC+ +C C  +    H +   P+
Sbjct: 133 VATC-TPECTAAHCTDECKCAHTHPKVHQMCNPPS 166


>AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.2 protein.
          Length = 235

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 74  LIRF*YSRFKLCSLIDVLVVFPQIACCYS 160
           +++F      LC +I+++V+ P +  CY+
Sbjct: 161 IVKFLPGTIYLCPIINIMVIPPVVVACYA 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,234
Number of Sequences: 27780
Number of extensions: 161596
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)