Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0274
(695 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 299 4e-80
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 248 1e-64
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 228 9e-59
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 204 2e-51
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 203 4e-51
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 200 3e-50
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 180 2e-44
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 175 1e-42
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 163 3e-39
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 161 1e-38
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 160 3e-38
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 159 8e-38
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 142 1e-32
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 139 7e-32
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 130 3e-29
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 124 3e-27
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 122 8e-27
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 120 4e-26
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 119 8e-26
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 116 4e-25
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 116 6e-25
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 114 2e-24
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 109 6e-23
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 109 8e-23
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 109 8e-23
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 107 2e-22
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 107 3e-22
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 104 2e-21
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 103 6e-21
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 97 4e-19
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 92 1e-17
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 91 2e-17
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 83 8e-15
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 80 6e-14
UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 59 9e-08
UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal ... 56 8e-07
UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=... 52 2e-05
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 51 2e-05
UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular... 51 2e-05
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 51 3e-05
UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108; Proteo... 51 3e-05
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 50 4e-05
UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7; Bacilli|... 50 5e-05
UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22; Bacteri... 50 7e-05
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 48 3e-04
UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster ye... 46 9e-04
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 44 0.003
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 44 0.003
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 43 0.006
UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellula... 42 0.014
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 41 0.025
UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 40 0.044
UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10; Rickett... 40 0.058
UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2; ... 39 0.10
UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4; Mycoplas... 39 0.10
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 39 0.10
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 39 0.13
UniRef50_Q9RSL3 Cluster: 50S ribosomal protein L6; n=65; cellula... 39 0.13
UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast p... 39 0.13
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 38 0.18
UniRef50_A0YJS9 Cluster: 50S ribosomal protein L6; n=2; cellular... 38 0.18
UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15; Bacteri... 38 0.18
UniRef50_Q9A8T8 Cluster: 50S ribosomal protein L6; n=16; Bacteri... 38 0.18
UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex ... 38 0.18
UniRef50_Q98PZ7 Cluster: 50S ribosomal protein L6; n=29; Bacteri... 38 0.24
UniRef50_Q5PA73 Cluster: 50S ribosomal protein L6; n=6; Anaplasm... 36 0.72
UniRef50_Q6E783 Cluster: Ribosomal protein L6; n=5; Oomycetes|Re... 36 0.72
UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10; Firmicu... 36 0.72
UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3; Planctom... 36 0.95
UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex ... 36 0.95
UniRef50_Q8DML8 Cluster: 50S ribosomal protein L6; n=4; cellular... 36 1.3
UniRef50_Q1XDI8 Cluster: Chloroplast 50S ribosomal protein L6; n... 36 1.3
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 35 2.2
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 35 2.2
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 35 2.2
UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3; ... 34 2.9
UniRef50_Q7NEG7 Cluster: 50S ribosomal protein L6; n=19; Bacteri... 34 3.8
UniRef50_Q8XPL8 Cluster: Putative surface-exposed adhesin protei... 33 5.1
UniRef50_Q6Q8X3 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 33 5.1
UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73; Proteob... 33 5.1
UniRef50_Q1MPQ0 Cluster: 50S ribosomal protein L6; n=1; Lawsonia... 33 5.1
UniRef50_Q4G353 Cluster: Chloroplast 50S ribosomal protein L6; n... 33 5.1
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 33 6.7
UniRef50_Q74L75 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 33 6.7
UniRef50_UPI000049A156 Cluster: ankyrin; n=9; Entamoeba histolyt... 33 8.8
UniRef50_Q1ZBZ7 Cluster: 50S ribosomal protein L6; n=1; Psychrom... 33 8.8
UniRef50_Q4UCX9 Cluster: Glutamate-cysteine ligase, putative; n=... 33 8.8
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 299 bits (734), Expect = 4e-80
Identities = 143/179 (79%), Positives = 159/179 (88%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
Q VKIP + VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG+KKELAA
Sbjct: 8 QCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAA 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
VRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRRV+MA
Sbjct: 68 VRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMA 127
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 539
PGVTVVNS QKDELI+EGN +E VS SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV
Sbjct: 128 PGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 248 bits (606), Expect = 1e-64
Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKWFGSKKEL 176
Q V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++ + L+V+KW+G++KEL
Sbjct: 8 QTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 67
Query: 177 AAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVK 356
A VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V E S++EIRNFLGEKYIRRV+
Sbjct: 68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVR 127
Query: 357 MAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 536
M PGV S QKDELI+EGN +E VS+SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 128 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 228 bits (558), Expect = 9e-59
Identities = 106/182 (58%), Positives = 142/182 (78%), Gaps = 1/182 (0%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELA 179
+ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A
Sbjct: 8 ETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMA 67
Query: 180 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
A+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M
Sbjct: 68 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 127
Query: 360 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 539
GVT++ S K KDEL+++GN +E VS SAALI Q VKNKDIRKFLDG+YVS+K T+
Sbjct: 128 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTIT 187
Query: 540 LD 545
D
Sbjct: 188 ED 189
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 204 bits (497), Expect = 2e-51
Identities = 89/170 (52%), Positives = 125/170 (73%)
Frame = +3
Query: 27 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 206
+TV VK R V V GPRG L ++F H +VDI +V + L V+ WFG++K++A ++T+ S +
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITSII 93
Query: 207 ENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 386
ENMI GVTKG++YKMR VYAHFPIN T+G ++EIRNF GEK +RR+++ G+T +
Sbjct: 94 ENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRN 153
Query: 387 PKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 536
K KDE+++ GNSLE +S S A IQ + +K KD+RKFLDG+YVSE+ +
Sbjct: 154 EKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 203
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 203 bits (495), Expect = 4e-51
Identities = 100/183 (54%), Positives = 132/183 (72%), Gaps = 2/183 (1%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
Q++++P+G+TV +KSR+V V GPRG L +N KH+ V VN +L+KV G +K +AA
Sbjct: 8 QQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAA 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPI--NCVTTEGNSIIEIRNFLGEKYIRRVK 356
+RTV S V+NMI GVTKG++YKMR VYAHFPI N V +G IE+RNFLG+K IR V
Sbjct: 68 LRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVP 127
Query: 357 MAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 536
+ GVT+ S KDE+++ GNS+EDVS +AA +QQ V+NKDIRKFLDG+YVS K +
Sbjct: 128 VRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187
Query: 537 VLD 545
D
Sbjct: 188 TED 190
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 200 bits (488), Expect = 3e-50
Identities = 97/178 (54%), Positives = 129/178 (72%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
+ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K A
Sbjct: 9 ETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNAC 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
+R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K
Sbjct: 68 IRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCL 127
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 536
PGVTV S KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 128 PGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 180 bits (439), Expect = 2e-44
Identities = 87/173 (50%), Positives = 111/173 (64%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+K+P + + R+VTVKG +G L R+F H +DI N + V WF K A R
Sbjct: 9 IKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHANDTI-SVAVWFPRGKRNALPR 67
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
T+CSH+ENM KGVT GF+YKMR YAHFPI + N IEIRNF+ + RR++ PG
Sbjct: 68 TICSHIENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRRIECLPG 127
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
VT+ S KDELI+ G S+EDVS +AA I +S V NKD+RKFLDG YVS +
Sbjct: 128 VTIAMSTNVKDELILRGISIEDVSHTAARIHESLKVPNKDLRKFLDGCYVSSR 180
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 175 bits (425), Expect = 1e-42
Identities = 86/190 (45%), Positives = 124/190 (65%), Gaps = 9/190 (4%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI-------RMVNPR--LLKVEKW 155
+ V IP+G+ + + + + V GPRG L R F+H VDI + P+ ++ ++ W
Sbjct: 9 EHVVIPEGVNIEINRKNIKVTGPRGSLTREFQHPKVDIYASKLVVKKEGPKENVVVIDMW 68
Query: 156 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 335
+G++++ A VRT+ SH++NMI GVTKG+QYKMR VYAHFP+ V + I+++NFLGE
Sbjct: 69 YGNRRDSAVVRTIASHIKNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQNFLGE 128
Query: 336 KYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLY 515
K R ++M GV V KDE+ +EGN +E VS SAA I + V+NKDIR+FLDG+Y
Sbjct: 129 KRTRHIEMYDGVVV--KKLGKDEICLEGNDVEKVSQSAANIHAANLVRNKDIRQFLDGVY 186
Query: 516 VSEKTTVVLD 545
VSEK + D
Sbjct: 187 VSEKCLIEND 196
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 163 bits (397), Expect = 3e-39
Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 10/185 (5%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM---VNPR------LLKVEKW 155
+ V IP+ + + KS++V VKGPRG L +NF+H A+DI++ VN + + V W
Sbjct: 8 EHVPIPEKIEITQKSKVVKVKGPRGELTKNFRHSALDIQVQKKVNKKNNVAKSRVSVRMW 67
Query: 156 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 335
+K+ V +V S + NMI+GVT G+++KM YAHFPI +EI+NFLGE
Sbjct: 68 QSYRKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVEIKNFLGE 127
Query: 336 KYIRRVKMAPGVTVV-NSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 512
K IR +K PGVT+ N ++K+ L ++GN L +VS + ALI Q+ VKNKDIR+FLDG+
Sbjct: 128 KIIRTIKCLPGVTITRNEAEEKNVLTLQGNDLNNVSLTCALIHQACAVKNKDIRQFLDGI 187
Query: 513 YVSEK 527
YVSEK
Sbjct: 188 YVSEK 192
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 161 bits (392), Expect = 1e-38
Identities = 71/117 (60%), Positives = 91/117 (77%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
V PDG+T VK+R+V V GPRG LKR+F+HL +++ V L+V KWFG +KE+AA+R
Sbjct: 10 VDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFGVRKEIAAIR 69
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
TVCSH++NMIKGVTKGF+YKMR+VYAHFPIN +G +EIRNFLGEK +R V +
Sbjct: 70 TVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 160 bits (388), Expect = 3e-38
Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 3/157 (1%)
Frame = +3
Query: 78 VLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 248
V +++ KH+ +D R++ + +K W +K A +RT + V NMIKGVT GFQYK
Sbjct: 92 VSQQSLKHMNLDARIIKSPAGQKIKFVVWHAGRKHAACLRTAQACVANMIKGVTVGFQYK 151
Query: 249 MRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSL 428
MRAVYAHFPIN + EIRNFLGEK +R + M GVT+ QKD++++EGN +
Sbjct: 152 MRAVYAHFPINIIIAGDKKSAEIRNFLGEKRVRNIAMLEGVTIQEDKAQKDQVLVEGNDI 211
Query: 429 EDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 539
+ VS SAAL+ +T V+NKDIRKFLDG+Y + K TVV
Sbjct: 212 DLVSQSAALLHGATLVRNKDIRKFLDGIYCTGKDTVV 248
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 159 bits (385), Expect = 8e-38
Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWFGSKKELA 179
+K+KIP + + K+R ++ G G + R+F+ + IR + + + W KK+LA
Sbjct: 8 RKIKIPKNVKIKTKARKISATGSLGSIIRSFEKTQISIRYFEKKKEIILLLWMAGKKQLA 67
Query: 180 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
+ T+ SH+ NMI GV+ GF+Y ++ +YAHFPIN T+ S +EIRNFLGEK IR++ M
Sbjct: 68 KLNTIASHITNMIVGVSLGFEYILQPIYAHFPINLSITDDGSCLEIRNFLGEKRIRKIYM 127
Query: 360 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
GV + + +KDE+ + G+ L VS +AA IQQS KNKD+RKFLDG+Y+ K
Sbjct: 128 GQGVKIKKNEAKKDEISVFGSDLNLVSLNAASIQQSCQAKNKDLRKFLDGIYIIMK 183
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 142 bits (343), Expect = 1e-32
Identities = 75/175 (42%), Positives = 115/175 (65%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
++++IP+G+ V V+ V VKGP+G L+R K+ V I + +++ + K F KK++A
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAI 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
VRT +H+ NMIKGVT+GF+Y+++ VY+HFP+ V +G+ ++ I NFLGEK RR K+
Sbjct: 68 VRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMT-VKVQGDEVV-IENFLGEKNPRRAKIL 125
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
PGVTV + E+ +EG E V +AA I+Q+T + D R F DG+Y+ EK
Sbjct: 126 PGVTV---KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 139 bits (336), Expect = 7e-32
Identities = 76/175 (43%), Positives = 113/175 (64%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
++V+IP+G+ V V+ V VKGP+G L+R F + I + ++ + K F +K++A
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVV-IYKDFPRRKDVAI 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
RT +H+ NMIKGVT+GF YK++ VY+HFPI+ V +G+ +I I NFLGEK R+ K+
Sbjct: 68 ARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPIS-VKVQGDEVI-IENFLGEKAPRKAKIL 125
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
PGVTV + E+I+EG E V +AA I+Q+T + D R F DG+Y+ EK
Sbjct: 126 PGVTV---KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 130 bits (314), Expect = 3e-29
Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRG-VLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAA 182
VK+P+ T + ++ T +GP+G +++ +H L DI N +++ W G +K +A
Sbjct: 30 VKVPEDCTATQEGKIFTFQGPKGSIVEDCTRHPLTFDIHEGN---IRIRLWNGKRKAMAL 86
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
TV S + N IK VT GF Y M+AVY HF IN E I+ ++NFLGEK ++R +M
Sbjct: 87 AITVESLLRNAIKAVTVGFAYTMKAVYNHFSINMEIKEDGKILLVKNFLGEKNVKRFRMR 146
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
G V ++KD ++IEG SL DVS SA I KN+D R FLDG++V+E+
Sbjct: 147 -GAARVRLDERKDTIVIEGPSLSDVSQSAGTITNECKAKNRDSRVFLDGIFVTER 200
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 124 bits (298), Expect = 3e-27
Identities = 68/123 (55%), Positives = 85/123 (69%)
Frame = +3
Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
KELA VRT+CSHV+NMIKGV+ GF+YK+R+VYAHFP+N V
Sbjct: 30 KELATVRTICSHVQNMIKGVSLGFRYKVRSVYAHFPLNVV-------------------- 69
Query: 348 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
+M GV S QKDELI+EGN E VS+SAALIQ++T V+N+DIRKF+DG+YVSEK
Sbjct: 70 --QMRTGVACSVSQAQKDELILEGNDTELVSNSAALIQKATAVENQDIRKFVDGIYVSEK 127
Query: 528 TTV 536
T+
Sbjct: 128 GTM 130
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 122 bits (294), Expect = 8e-27
Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Frame = +3
Query: 12 KIPDGLTVHVKSRLVTVK--GPR----GVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKK 170
KIP+ + VKS +VT++ P+ L ++ HL +D N + WFG++K
Sbjct: 12 KIPENIKCTVKSGVVTIEHQDPKDKKTSKLVKDLSHLKLDFEYDENDHQIVARCWFGNRK 71
Query: 171 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 350
LA + T+ V+NMI GVT G++YKM VY+HFPI +E + F+G K +
Sbjct: 72 LLARIGTLFGIVKNMITGVTLGWRYKMHFVYSHFPIKHTCSEDGRTFDFNGFMGHKEHKI 131
Query: 351 VKMAPGVTV-VNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 518
V GV + N KDE+ IEG +LEDVS I Q T +K+KD+RKFLDG+YV
Sbjct: 132 VTAPEGVRIWSNESVAKDEINIEGANLEDVSLVCGQIHQLTKIKDKDLRKFLDGIYV 188
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 120 bits (288), Expect = 4e-26
Identities = 68/175 (38%), Positives = 106/175 (60%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
++V+IP G+ V + ++TV GP+G L R+ + +D+ MV + V K+ LA
Sbjct: 5 RQVEIPPGVDVTLDGGVLTVSGPKGTLVRDMRFPQIDL-MVEGGEVVVSTASEKKRILAM 63
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
T+ +H +NMI+GV G++Y+M+ VY+HFPI + +GN +EI NFLGEK R K+
Sbjct: 64 TGTLEAHAKNMIRGVADGYEYRMKVVYSHFPIQ-LKQQGNR-LEITNFLGEKQPRIAKII 121
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
GVTV DE+ I G E V ++AA I+ +T + +D R F DG+Y++E+
Sbjct: 122 EGVTVKIG---NDEVTITGIDKEKVGNTAANIEHATRITKRDPRVFQDGIYITER 173
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 119 bits (286), Expect = 8e-26
Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Frame = +3
Query: 9 VKIP-DGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKEL 176
++IP DG TV V KSR + V G G L+R F+H+ VD+++V R + VE WFG K
Sbjct: 69 IQIPEDGSTVKVTLKSRHIVVSGKYGKLERTFRHIPVDMKLVEDGRKITVEMWFGLTKNK 128
Query: 177 AAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFL 329
A +RTVCSH+ENMI GV + +QYK+R VYAHFPIN T S IEIRNFL
Sbjct: 129 ACIRTVCSHIENMITGVRQRYQYKLRFVYAHFPINSNITNDGSTIEIRNFL 179
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 116 bits (280), Expect = 4e-25
Identities = 58/182 (31%), Positives = 116/182 (63%), Gaps = 1/182 (0%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELA 179
++++IPD + V +++ ++ VKGP+G + ++F + A IR+ +N + +E F +++ A
Sbjct: 11 EEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSY-AKGIRIQLNEGKIILETTFADRRKKA 69
Query: 180 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
+ ++ +H++NMI G G++Y ++ + HFPI+ V G+ +++ N +GEK IRR K+
Sbjct: 70 LLYSIIAHIKNMITGTINGYRYYLKVISTHFPIS-VKVSGDE-VQVSNLIGEKNIRRAKI 127
Query: 360 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 539
PGV V + +++++EG+ + +V+ +AA I+ ST + D R F DG+Y+ +K +
Sbjct: 128 LPGVKVT---VKGEDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVIG 184
Query: 540 LD 545
L+
Sbjct: 185 LE 186
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 116 bits (279), Expect = 6e-25
Identities = 66/173 (38%), Positives = 106/173 (61%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
++IP+G++V + + T KGP+G ++R F + + I + ++ V+ K++ A V
Sbjct: 9 IEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGEVV-VDAESSRKEQKAMVG 67
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
T SH++N+I GV++GF+ KM VYAHFP+ V EG +++ I NFLGEK R K+ G
Sbjct: 68 TFASHLKNLIIGVSEGFECKMNIVYAHFPMQ-VKVEGKTLV-IGNFLGEKKPRIAKIL-G 124
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
T V +E+++ G + EDV +AA I+Q T +K D R F DG+Y+ +K
Sbjct: 125 ETKVK--VSGNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 114 bits (275), Expect = 2e-24
Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLA-VDIRMVNPRLLKVEKWFGSKKELA 179
+ V IP+G+ VHV + V V+GP G ++++F H + IR V + VE + +KK+ A
Sbjct: 8 ESVPIPEGVKVHVNGKRVEVEGPLGKVEKDFSHARRISIR-VEGNSVVVETFHATKKDYA 66
Query: 180 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
V T+ S + NMI GVTKG++YK++ VYAHFP++ + E + II I NFLGE+ R +
Sbjct: 67 LVGTIASIINNMIIGVTKGYRYKLKIVYAHFPMS-LKVEKDKII-IENFLGERGKRIAGI 124
Query: 360 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNK 485
PG V +KD++I+EG L+ V+ +AA I +T ++ K
Sbjct: 125 MPGAKV---KIEKDDVIVEGIDLDAVAQTAANIHLATHLRGK 163
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 109 bits (262), Expect = 6e-23
Identities = 62/174 (35%), Positives = 104/174 (59%)
Frame = +3
Query: 6 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+V+IP+G+TV ++ +GP G +NF+++ V I + + ++ ++ K++ A +
Sbjct: 12 QVEIPEGVTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIADGKV-NLKTIGERKRDYAIL 70
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T S + N+ +G+ +G+ KM+ V+AHFPI V EG I+ I NF GE+ R +
Sbjct: 71 HTARSIIRNICEGLVEGYTIKMKVVFAHFPIT-VKVEGKKIL-IENFQGERAPRSTHIMG 128
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
V+ PK +D +++ G D++ +AA I+ +T VKNKD R FLDG+YV EK
Sbjct: 129 NTKVI--PKGED-VLLTGEVWTDITQTAANIELTTKVKNKDHRVFLDGIYVYEK 179
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 109 bits (261), Expect = 8e-23
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI--RMVNPRLLKVEKWFGSKKELAA 182
+ +P + + +K + + KG G L + F + V+I + + L V ++ +K A
Sbjct: 10 INVPKDVKIRIKEKTIYTKGINGELSKKFNNKNVNIIYKKNDSNSLIVRCYYNNKSSSAI 69
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
VRT+ S + NMI GV+KGF Y ++ VY+HFPI+ + + +EI N G K I +
Sbjct: 70 VRTITSIIYNMIIGVSKGFTYLLKIVYSHFPISVKYIQNENTLEITNLFGLKRIDSFFIP 129
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
V V + K E+I+ +E + ++LIQ ++ NKD R F+DG+Y++ K
Sbjct: 130 SSVQVCTNNLNKKEIILLSKDIETLGILSSLIQNKCSINNKDCRVFIDGIYLASK 184
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 109 bits (261), Expect = 8e-23
Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = +3
Query: 48 RLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWFGSKKELAAVRTVCSHVENMIKG 224
R++ VKG G ++F+ + V IR+ + LK E K++LA + T S V N+ +G
Sbjct: 8 RMLHVKGKLGSAHKSFRKIPVGIRIDGSSVVLKAEGT--RKRDLAILNTARSIVRNLCEG 65
Query: 225 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDE 404
V G+ K++ VYAHFPI + +G I+ + NF GE+ R+ K+ G VV+ + ++
Sbjct: 66 VGVGYTIKLKVVYAHFPIT-IKQDGAMIL-VENFQGERSARKAKIVGGTKVVS---KGED 120
Query: 405 LIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
+I+ G+ L DVS +AA ++Q T VKNKD R FLDG+YV EK
Sbjct: 121 VIVTGHVLTDVSQTAANLEQGTKVKNKDHRVFLDGVYVYEK 161
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 107 bits (258), Expect = 2e-22
Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Frame = +3
Query: 9 VKIPDGLTVHVKS---RLVTVK--GPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 173
V++P+ + + ++ R T+K GP+G R K+ V I + + ++ +V KK
Sbjct: 24 VEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFIEVGDGKV-RVYTTSPKKKH 82
Query: 174 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 353
A V T H+EN+I GV +GF+Y ++ VYAHFPI V EGN +I I NF+GEK+ RR
Sbjct: 83 KAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIK-VRVEGNEVI-IENFIGEKHPRRA 140
Query: 354 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
K+ V S + ++ + G +E+ +AA ++Q+T +K KD R F DG+Y+ +K
Sbjct: 141 KIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 107 bits (257), Expect = 3e-22
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Frame = +3
Query: 6 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
++ IP+ + V ++ ++ V GP+G ++R F H + + VN + +E +F +++E +
Sbjct: 9 EIPIPENVKVSYENNILKVSGPKGEVERKFYHPLIKLS-VNDNKIILETYFATRREKRLI 67
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK--YIRRVKM 359
T SH++NM++GV F Y+++ Y HFP+ V EGN +I + NFLGEK I+ +
Sbjct: 68 NTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMR-VKLEGNKLI-VENFLGEKAPIIKELPY 125
Query: 360 APGVTV-VNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV--KNKDIRKFLDGLYVSEK 527
V V + K + E+++E E A++I+QST K KD R+F DG+++ K
Sbjct: 126 LDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYK 184
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 104 bits (249), Expect = 2e-21
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 2/176 (1%)
Frame = +3
Query: 6 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
K+ +P+G+T V VTV L R F+H +++R + L +V KKE A
Sbjct: 10 KISLPEGVTAAVNGNDVTVAKDGNSLTREFRHPRIEVRDSSGEL-EVFVNLPRKKEKALA 68
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T +H+ NM +GV GF+YK++AVY+HFP+ + GN + + N GEK + RV P
Sbjct: 69 GTWAAHLTNMARGVDSGFEYKLKAVYSHFPMT-IRVNGNQ-MTVTNLFGEK-VPRVAALP 125
Query: 366 --GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
V + K ++ + G E V +AA I++S +KN+D R F DG+Y+ K
Sbjct: 126 WSPAEVEVKVQNKTDVTVSGADREKVGQTAANIERSCRIKNRDRRVFQDGIYIVSK 181
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 103 bits (246), Expect = 6e-21
Identities = 60/174 (34%), Positives = 99/174 (56%)
Frame = +3
Query: 6 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+++IP+ + +TV+G G + R + +D+ V+ + +E + K ++ +
Sbjct: 5 ELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS-VDGDTVVIESDEDNAKTMSTI 63
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T SH+ENM GVT+G++Y M Y+HFP+ V EG+ ++ I NFLGEK RR +
Sbjct: 64 GTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQ-VNVEGDEVV-IENFLGEKAPRRTTI-H 120
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
G T V +EL + G +E V +AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 121 GDTDVEI--DGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 97.1 bits (231), Expect = 4e-19
Identities = 57/181 (31%), Positives = 103/181 (56%), Gaps = 6/181 (3%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRL-----VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSK 167
++VKI D + + + R VTVKGP+G + + F + V + + + ++ + ++
Sbjct: 21 ERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDEVV-IAATRSNR 79
Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
++ A + + +++ENM KGVT+G +YK++ VY+HFP + + I NF+GE R
Sbjct: 80 RQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPR 139
Query: 348 RVKMA-PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 524
++ P T V Q ++I+ G E V +AA ++Q+T +K++D R F DG+Y+ E
Sbjct: 140 VAEIVDPENTEV--IVQGQDIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVE 197
Query: 525 K 527
K
Sbjct: 198 K 198
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 91.9 bits (218), Expect = 1e-17
Identities = 55/173 (31%), Positives = 98/173 (56%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
++IP + V + ++++ L++ F V + +V +K+ K + +E V
Sbjct: 10 IEIPKDVKVGLSGTMLSMTFGNKKLEKKFADNYVRL-LVEDNKIKIVKSKNNSRERGIVG 68
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
T S + NM+KG+ +GFQY+M+ Y+HFP+ V+ +G +++ I NF GE+ R ++ G
Sbjct: 69 TWASEISNMVKGLKEGFQYEMKIDYSHFPMR-VSVKGKTVV-IENFFGERSPRTAEIV-G 125
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
T V+ + D L + G S +DV +AA I+++T +K D R F DG+Y+ K
Sbjct: 126 ETQVS--VKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISK 176
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 91.5 bits (217), Expect = 2e-17
Identities = 55/161 (34%), Positives = 97/161 (60%), Gaps = 5/161 (3%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSR-----LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSK 167
++V+IP G++V ++ +V VKGP G + + FK+ V + + + +++ +E + K
Sbjct: 8 EEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDGKIV-MEVFKARK 66
Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
+E A + T ++NM GVT+G++YK++ +Y HFP+ V +GN ++ I NFLG K
Sbjct: 67 REYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPM-LVKVQGNQLV-IENFLGRKSKI 124
Query: 348 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 470
+ + GV V K K++++IEG E VS+ AA +Q +T
Sbjct: 125 TLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAVQAAT 163
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 82.6 bits (195), Expect = 8e-15
Identities = 51/171 (29%), Positives = 90/171 (52%)
Frame = +3
Query: 6 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
++K+PD + +++ + +KG G R F+ V + +K+ +K V
Sbjct: 9 EIKLPDDVQATMENNELKIKGKLGEASRIFRDNYVKA-YIEGSSVKIATSKNNKYTKGIV 67
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T S + +I+GVTKGF+Y M+ + HFP+ V+ G+ +I + NFLGEK R K+
Sbjct: 68 GTWYSETKLLIEGVTKGFEYHMKIDFTHFPMR-VSVRGDKLI-VENFLGEKSPRSAKIVD 125
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 518
G V + D + I G + +AA I+++T +++ D R F DG+++
Sbjct: 126 GCKV---SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 79.8 bits (188), Expect = 6e-14
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLK--VEKWFGSKKEL 176
Q V IP + + +K R V VKGP+G L R+F H+ V++ ++ +L K V+KW+G++KEL
Sbjct: 8 QTVDIPANIGIILKGRTVIVKGPQGSLHRDFNHINVELSLLGKKLKKFHVDKWWGNRKEL 67
Query: 177 AAVRTVCSHVENMIKGVTKG 236
A V T+CS V+N IK VT G
Sbjct: 68 ATVHTICSPVQNTIKWVTLG 87
>UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 140
Score = 65.7 bits (153), Expect = 1e-09
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Frame = -1
Query: 539 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQGVAFND*FILLFGRVNDGHTRC 360
+N R I TIQE +DIL+ D + LL+ SS R+ FQGV N+ FILL R G T
Sbjct: 21 NNGTSFRNINTIQEFTDILVSDTTDLLNISSILRNSFQGVTRNNQFILLSRRNFHGDTFM 80
Query: 359 HLYPSDVFLPQEVTYLNN*ITL--SGDTVNGEVSIHSTHLVLEAFSYSFNHV 210
S+ F QE++ N +T+ + VN E+ I+ +HLV FS + + V
Sbjct: 81 DFNFSNSFFTQEISNFNVILTIFFNNVNVNWEMRINKSHLVFVTFSDTSDQV 132
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +3
Query: 198 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 377
+H+++ + GF Y+MR+VYA FP N + E S+IE + +G+KYI RV++ V
Sbjct: 21 NHLQSCSEHDQGGFHYRMRSVYAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQIRTSVAF 80
Query: 378 VNSPKQKDELI 410
S QK+EL+
Sbjct: 81 YASQAQKNELM 91
>UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal
protein L9; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L9 - Rattus norvegicus
Length = 77
Score = 56.0 bits (129), Expect = 8e-07
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKWFGSKKEL 176
Q VKIP+ + +V VK RG L+R+F H+ +++R++ R L+V+KW + K L
Sbjct: 8 QAVKIPEN------AHIVIVKDTRGTLQRDFNHINIELRLLAKRKKQLQVDKWLKTMK-L 60
Query: 177 AAVRTVCSHVENMIKGV 227
A T+ SHV+NMIK V
Sbjct: 61 ATAHTIYSHVQNMIKRV 77
>UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L9e - Antonospora locustae (Nosema locustae)
Length = 160
Score = 51.6 bits (118), Expect = 2e-05
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH--LAVDIRMVNPRLLKVEKWFGSKKEL 176
+KV+IP+G +V + R++TV+G R R+ H L +D+ + RL ++ +++
Sbjct: 8 EKVEIPEGCSVEILERVMTVRGKRATAVRDLSHFVLTMDVHEGHVRL----RYGMAQQGA 63
Query: 177 AAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVK 356
VC +N I G G++Y +R + F +G +++ ++NFL + K
Sbjct: 64 QQADYVCICDQNCIVGCMSGYEYTLRLCTSTFNERSDRDDGKTVV-VKNFLDRSMLGDTK 122
Query: 357 MAPGVTVVNSPKQ 395
A + ++P++
Sbjct: 123 CAETLLRGSAPRK 135
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Frame = +3
Query: 15 IPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLK----VEKWFGSKKELA 179
IPDG+ + V + + +KG G L N ++L VD R N ++K V K +K L
Sbjct: 13 IPDGVELSVDGQTIKIKGKNGELSLNLPEYLEVD-RDNNELMIKTKEGVVKRSSDEKRLK 71
Query: 180 AVR-TVCSHVENMIKGVTKGFQYKM 251
A+R T SHV NMIKGVT+G++ ++
Sbjct: 72 ALRGTFTSHVRNMIKGVTEGYKKEL 96
>UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular
organisms|Rep: 50S ribosomal protein L6 - Borrelia
garinii
Length = 180
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+KIPD + + VK LV V+G RG L ++ K ++++++ N ++ V + F KK A
Sbjct: 9 IKIPDTVKIDVKGNLVIVEGTRGKLVQDIKD-SINVKVENGSVI-VNRAFNDKKTKAYHG 66
Query: 189 TVCSHVENMIKGVTKGF 239
S + NM+KGVT+GF
Sbjct: 67 LYRSLIFNMVKGVTEGF 83
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 50.8 bits (116), Expect = 3e-05
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR-LLKVEKWFGSKKELAAV 185
VK+P G+ V + +L++VKGP+G L+ H +V++ +V L+ G ++ A
Sbjct: 9 VKLPSGVEVKLVGQLLSVKGPKGTLEL-IIHSSVEVEIVEEAGELRFAARNGDQQTRAMA 67
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T + V NM++GV++GF+ K++ V + T N LG + ++
Sbjct: 68 GTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLA------LGFSHPVDYELPN 121
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
G+T +P Q D ++I G + V AA I+
Sbjct: 122 GIT-AETPSQTD-ILIRGIDKQLVGQVAAEIR 151
>UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108;
Proteobacteria|Rep: 50S ribosomal protein L6 - Coxiella
burnetii
Length = 178
Score = 50.8 bits (116), Expect = 3e-05
Identities = 46/152 (30%), Positives = 74/152 (48%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+KIP G+ V+V + +TVKG G L R H AV + + L + S A
Sbjct: 10 IKIPTGVEVNVAGQQITVKGKLGTLTRVI-HRAVKVTKTDAELQTICA-NDSPGSNALAG 67
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
T + + NM++GV GFQ K+ V + EG ++ +G + ++M G
Sbjct: 68 TARAVLANMVQGVHTGFQRKLVMVGVGYR---AKAEGK---KLNLTVGLSHPVNIEMPEG 121
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 464
+T V +P Q E+I++G + VS AA I++
Sbjct: 122 IT-VETPSQ-TEIIVKGADKQRVSQVAANIRE 151
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
V+IP+G+ + + + VTVKGP+G L R H + I + +L VE+ K+ A
Sbjct: 9 VEIPEGVELKLDNNTVTVKGPKGELSREL-HPDMKIN-IEDNVLTVERPSDHKEHRALHG 66
Query: 189 TVCSHVENMIKGVTKGFQYKMRAV 260
T S + NM+ GV+KGF+ + +
Sbjct: 67 TTRSLINNMVIGVSKGFEKSLEII 90
>UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7;
Bacilli|Rep: 50S ribosomal protein L6 - Bacillus
subtilis
Length = 179
Score = 50.0 bits (114), Expect = 5e-05
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVK-SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
++IP +TV + + V VKGP+G L R F H ++I+ V +L V + K+ A
Sbjct: 9 LEIPSDVTVTLNDNNTVAVKGPKGELTRTF-HPDMEIK-VEDNVLTVARPSDQKEHRALH 66
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T S + NM++GV+KGF+ + V + + GN ++ L Y V++ P
Sbjct: 67 GTTRSLLGNMVEGVSKGFERGLELVGVGYR---ASKSGNKLV-----LNVGYSHPVEIVP 118
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
+ + +++++G E V + AA I+
Sbjct: 119 EEGIEIEVPSQTKVVVKGTDKERVGAIAANIR 150
>UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22;
Bacteria|Rep: 50S ribosomal protein L6 -
Thermoanaerobacter tengcongensis
Length = 180
Score = 49.6 bits (113), Expect = 7e-05
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVK-SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+ IP G+ V V +VTVKG +G L++ F + V+I + + ++ K K+E A
Sbjct: 9 IPIPKGVEVKVSPDNVVTVKGAKGTLEKKFPPI-VNIEVRDGEVVVTRKG-DDKEERAMH 66
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T + + NM+KGVT+GF+ + V + +G + I N +G + ++ P
Sbjct: 67 GTTRAIIANMVKGVTEGFEKALEIVGVGYR---AAKQGKKL--ILN-VGYSHPVEIEEEP 120
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 464
G+ ++ + + +I+ G E V AA I++
Sbjct: 121 GIEII--VEGNNRIIVRGADKERVGQVAANIRR 151
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 47.6 bits (108), Expect = 3e-04
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Frame = +3
Query: 48 RLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGV 227
+L+ + GPRG+L RNFKH ++DI+ V+K KE+ + + +++++
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQ--------VQKEI---KEIKQIGLIKIEYQDVVQYS 101
Query: 228 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP-KQKDE 404
+ FQ K A +I+N IR + GV + ++K+
Sbjct: 102 KQRFQVKSIAA-----------------QIKNM-----IRGI--TSGVVITRKEAEEKNV 137
Query: 405 LIIEGNSLEDVSSSAALIQQSTTVKNKDIR 494
LI+ N L +VS + ALI Q+ VKNKDIR
Sbjct: 138 LILSANDLNNVSLTCALIHQACAVKNKDIR 167
>UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster
yellows phytoplasma|Rep: 50S ribosomal protein L6 -
Aster yellows phytoplasma
Length = 175
Score = 46.0 bits (104), Expect = 9e-04
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFGSKKELAAV 185
V IP+ + V + ++ +KGP G L + + DI ++ N + V++ KK A
Sbjct: 17 VLIPNNVFVKKQDNIIYIKGPLGKLNQE---IIGDINIIINHNNIIVKRKHNDKKNRALH 73
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
+ NMIKGV+ GF+ K+ + F N + N I+ + +G + +K+
Sbjct: 74 GLYRMLIYNMIKGVSNGFKKKLELIGVGFRAN-INNNNNQILNLN--IGYSHNIMIKLPQ 130
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
+T+ + ++I++ + + AA I+
Sbjct: 131 SITLEVKMDKNPQIILKSYDKQLLGIVAAKIR 162
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ IPD ++V + VTVKGP+G LKR V + V+ ++ K++
Sbjct: 9 IPIPDKVSVSLDGLAVTVKGPKGELKRTLPD-GVTVNQVDNTIVVAPT--SEKRQSRERH 65
Query: 189 TVC-SHVENMIKGVTKGFQYKMRAV 260
+C + V NMI+GV+KG+ K+ V
Sbjct: 66 GLCRTLVANMIEGVSKGYSKKLEIV 90
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIR----MVNPRLLKVEKWFGSKKE 173
+ +P G+TV +K +V VKGP+G L + F ++ +++ V P ++ + +K
Sbjct: 9 IVLPQGVTVEIKDNVVKVKGPKGELSQEFLPYVKIEVEGNEVWVRPNEEQIIRKSDWRKV 68
Query: 174 LAAVRTVCSHVENMIKGVTKGFQYKMRAV 260
T S + NM+ GVT+G++ ++ V
Sbjct: 69 KMFQGTYWSLIRNMVVGVTEGYKKELEIV 97
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 43.2 bits (97), Expect = 0.006
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVE---KWFGSKKELA 179
+ IP G+TV +K +VTVKGP+G L + + + A+++ + + + E + + K+
Sbjct: 9 ISIPAGVTVTLKDDVVTVKGPKGELSQ-YVNPAINVAIEDGHVTLTENEKEMIDNPKQKH 67
Query: 180 AVRTVC-SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVK 356
A + S V NM+ GV++G++ ++ V + + +GN IIE+ LG + ++
Sbjct: 68 AFHGLYRSLVHNMVVGVSEGYKKELELVGVGYR---ASNQGN-IIELA--LGYTHNIFIQ 121
Query: 357 MAPGVTV-VNSPKQKDELII 413
+ V V S + K+ LII
Sbjct: 122 LPAEVKVETKSERNKNPLII 141
>UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellular
organisms|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 181
Score = 41.9 bits (94), Expect = 0.014
Identities = 33/152 (21%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ +P + + + + + VKGP+G L R+ L + ++ N ++L V + + +
Sbjct: 9 IALPAKVEIQIDGQHIAVKGPKGQLSRSLPPL-ITVQQ-NAQMLTVSR-LNDSRPARQLH 65
Query: 189 TVC-SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
+C + V NM+ GV+KGF+ ++ V + +G+ + + N +G + + P
Sbjct: 66 GLCRTLVANMVDGVSKGFERRLELVGVGYR---AAIQGSKL--VLN-VGYSHPVEIPFPP 119
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
G+ + + + + +++ G E V ++AA I+
Sbjct: 120 GIQI--AVEGNNIIVVSGTDKELVGNTAARIR 149
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 41.1 bits (92), Expect = 0.025
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ IPD + V + VTVKGP+G LKR V + V+ ++ +K+
Sbjct: 9 IPIPDKVNVTLSGLAVTVKGPKGELKRTLPS-GVSVNQVDNSIVVAPT--STKRSSRERH 65
Query: 189 TVC-SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
+C + V NM+ GV++G+ K+ V + +G +++ + Y V++ P
Sbjct: 66 GLCRTLVANMVIGVSQGYSKKLEIVGVG---SRAQVKGKTLV-----VSAGYSHPVEVVP 117
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
+ + + + + G E V + AA I+
Sbjct: 118 PEGITFTVENNTNVTVSGTDKELVGNEAAKIR 149
>UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Dehalococcoides
sp. (strain CBDB1)
Length = 182
Score = 40.3 bits (90), Expect = 0.044
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+K+P G+ V + VTVKGP+G L R+F+ V I L+ G+ K +
Sbjct: 9 IKVPPGIKVDINGNDVTVKGPKGTLSRSFRP-EVTINREGDYLVVAP--VGTDKATRSFF 65
Query: 189 TVC-SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
+ + ++NMI GV GF + V + +G+ ++ + V +AP
Sbjct: 66 GLSRTLLDNMIVGVKDGFDKNLEIVGVGMRAD---KDGDKVV-----FKVGFSHSVTVAP 117
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
+ S ++ + G + EDV AA I+
Sbjct: 118 PAGITLSVDGTTKVKVSGINKEDVGQMAAEIR 149
>UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10;
Rickettsieae|Rep: 50S ribosomal protein L6 - Rickettsia
prowazekii
Length = 177
Score = 39.9 bits (89), Expect = 0.058
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFK-HLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+ IP+G+ V + V + GP+G L + FK ++A+ ++ L V+ +K A
Sbjct: 9 ITIPEGVKVGLNDLEVKISGPKGELSKTFKGNIAI---IMEENKLVVKPLAVNKNARAMW 65
Query: 186 RTVCSHVENMIKGVTKGFQYKM 251
T S + NMI GV +GF+ K+
Sbjct: 66 GTARSIICNMITGVKEGFKLKL 87
>UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2;
Candidatus Blochmannia|Rep: 50S ribosomal subunit
protein L6 - Blochmannia floridanus
Length = 181
Score = 39.1 bits (87), Expect = 0.10
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +3
Query: 15 IPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTV 194
IP+ + + ++ + V G G L F H + ++ N + L V + + A + T
Sbjct: 13 IPNEIQITIQDCCILVVGVLGNLSYKF-HNFIGVQFSNVKNLIVYSRYRNHVNRALLGTT 71
Query: 195 CSHVENMIKGVTKGFQYKMRAV 260
CS + +MI GVT+GF K++ +
Sbjct: 72 CSLINSMIVGVTEGFVKKLQLI 93
>UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4;
Mycoplasma|Rep: 50S ribosomal protein l6 - Mycoplasma
mobile
Length = 179
Score = 39.1 bits (87), Expect = 0.10
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 15 IPDGLTVHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWFGSKKELAAVRT 191
+P + +++K+ LV +KG GVL N L A+++ + ++ + K T
Sbjct: 11 LPKDVELNIKNNLVEIKGKLGVLTFNVNPLIAIEVENHEVKTIRANE---EKHTKQLHGT 67
Query: 192 VCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGV 371
S +ENMI GV+KGF+ ++ + + S IEI G ++ V + P
Sbjct: 68 TNSIIENMIIGVSKGFKKELEIK----GVGYKSALKGSQIEIA--AGYSHLVYVNV-PKE 120
Query: 372 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 473
V PK ++II G + V AA+I++ T
Sbjct: 121 LKVEIPK-PTQIIISGIDNQKVGELAAVIRKVRT 153
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 39.1 bits (87), Expect = 0.10
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +3
Query: 9 VKIPDGLTVHVKSR-LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+++P+ + V +K R ++V+GP+G L+ F H + + N + K + + +
Sbjct: 9 IEVPNAVKVDIKDRNFISVEGPKGKLEYQFNHR---LTITNENKVITVKRPNDEIFMKKI 65
Query: 186 R-TVCSHVENMIKGVTKGFQYKMRAV 260
T + + NM++GV+KGFQ ++ V
Sbjct: 66 HGTTRALLSNMVEGVSKGFQKTLKIV 91
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 38.7 bits (86), Expect = 0.13
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 650 HWPSFYNVVTGKTLA 694
HWPSFYNVVTGKTLA
Sbjct: 5 HWPSFYNVVTGKTLA 19
>UniRef50_Q9RSL3 Cluster: 50S ribosomal protein L6; n=65; cellular
organisms|Rep: 50S ribosomal protein L6 - Deinococcus
radiodurans
Length = 185
Score = 38.7 bits (86), Expect = 0.13
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
Q + +P G+TV+ + + VKGP+G L + + + +R +LL VE+ ++K A
Sbjct: 7 QPIAVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGDQLL-VERPSDAQKHRAL 64
Query: 183 VRTVCSHVENMIKGVTKGF 239
+ V N +KGV+ G+
Sbjct: 65 HGLTRTLVANAVKGVSDGY 83
>UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast
precursor; n=8; Magnoliophyta|Rep: 50S ribosomal protein
L6, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 223
Score = 38.7 bits (86), Expect = 0.13
Identities = 31/154 (20%), Positives = 69/154 (44%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 49 QPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQM 107
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
+ +NM+ GV+KGF+ K+ V + T +G ++ L + VKM
Sbjct: 108 HGLFRTLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPVKMQ 159
Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 464
++ ++ + + G ++ AA +++
Sbjct: 160 IPDSLKVKVEENTRITVSGYDKSEIGQFAATVRK 193
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 38.3 bits (85), Expect = 0.18
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ +P G+ + +VTVKGP+G L R F ++IR V + + + SK+
Sbjct: 9 IVLPAGVELANNDNVVTVKGPKGELTREFSK-DIEIR-VEGTEITLHRPNDSKEMKTIHG 66
Query: 189 TVCSHVENMIKGVTKGF--QYKMRAV 260
T + + NM+ GV++GF + +MR V
Sbjct: 67 TTRALLNNMVVGVSEGFKKELEMRGV 92
>UniRef50_A0YJS9 Cluster: 50S ribosomal protein L6; n=2; cellular
organisms|Rep: 50S ribosomal protein L6 - Lyngbya sp.
PCC 8106
Length = 181
Score = 38.3 bits (85), Expect = 0.18
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV- 185
+ IP +T ++ + + VKGP+G L R + + + L+K ++L +
Sbjct: 9 IPIPPKVTFTIEGQHIIVKGPKGELSRVLPEKVILEQDGDTLLVKRRDESRVARQLHGLS 68
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
RT+ V NM+ GV+KGF+ ++ + +G ++I L Y + V+M P
Sbjct: 69 RTL---VANMVDGVSKGFEKRLEIQGVGYR---AQVQGKNLI-----LNVGYSKPVEMNP 117
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
+ + + +II G E V + AA I+
Sbjct: 118 PQGITVAVENNTNVIISGIDKEVVGNIAAQIR 149
>UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15;
Bacteria|Rep: 50S ribosomal protein L6 - Chlorobium
tepidum
Length = 179
Score = 38.3 bits (85), Expect = 0.18
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+++ D V VK ++ V GP+G L + I V + V++ SK+ A
Sbjct: 9 IRLADQAQVEVKENMINVTGPKGALSQALVDEV--IVSVADGAVTVQRKDDSKRARAMHG 66
Query: 189 TVCSHVENMIKGVTKGFQYKM 251
V NM++GVTKGF K+
Sbjct: 67 LYRMLVSNMVEGVTKGFTRKL 87
>UniRef50_Q9A8T8 Cluster: 50S ribosomal protein L6; n=16;
Bacteria|Rep: 50S ribosomal protein L6 - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 177
Score = 38.3 bits (85), Expect = 0.18
Identities = 26/84 (30%), Positives = 40/84 (47%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
V IP G+ V + + VTVKGP+G L V+++ LL + +K+
Sbjct: 9 VAIPSGVQVTLAGQTVTVKGPKGQLSWTIAD-EVEVKQEGAELLLAPR-VDTKRAKGMWG 66
Query: 189 TVCSHVENMIKGVTKGFQYKMRAV 260
+ V NM+ GVT GF+ + V
Sbjct: 67 LSRTLVANMVHGVTVGFEESLELV 90
>UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex
pyrophilus|Rep: 50S ribosomal protein L6 - Aquifex
pyrophilus
Length = 187
Score = 38.3 bits (85), Expect = 0.18
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 42 KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 218
K VTV+GP+G L+ N H + + + R +K+++ A T+ + ++NMI
Sbjct: 22 KEHKVTVEGPKGKLELNI-HPDIKVTLNQQERWIKLDRPSDRSFHKAIHGTMAALIKNMI 80
Query: 219 KGVTKGF 239
KGVT+GF
Sbjct: 81 KGVTEGF 87
>UniRef50_Q98PZ7 Cluster: 50S ribosomal protein L6; n=29;
Bacteria|Rep: 50S ribosomal protein L6 - Mycoplasma
pulmonis
Length = 179
Score = 37.9 bits (84), Expect = 0.24
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
++IP G V + VKG G L R F V+I+ N + + VE+ K
Sbjct: 9 IQIPSGTEVKIDGSFFEVKGKLGSLSRLFSPF-VNIKHENNQ-ISVERLNELKPTKQLHG 66
Query: 189 TVCSHVENMIKGVTKGFQYKMR 254
T + + NM+KGV++GF+ +++
Sbjct: 67 TTNALIANMVKGVSEGFKKELK 88
>UniRef50_Q5PA73 Cluster: 50S ribosomal protein L6; n=6;
Anaplasmataceae|Rep: 50S ribosomal protein L6 -
Anaplasma marginale (strain St. Maries)
Length = 181
Score = 36.3 bits (80), Expect = 0.72
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Frame = +3
Query: 9 VKIPDGLTVHV-KSRLVTVKGPRGVLKRNFKHLAVDIRMV--NPRLLKVEKWFGSKKELA 179
+++P+G+ V V VTV G G +F L IR V LL V + S +
Sbjct: 9 IEVPEGVKVDVCDGNSVTVIGKDGT-SSSFS-LCHGIRAVLDGSTLLLVNERQSSPRAKV 66
Query: 180 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 359
+ S + N IKG++KGF ++ + + C GN + + F+G + R +
Sbjct: 67 MWGSYRSGISNAIKGLSKGFSVELEVNGVGYRVVC----GNKYLSM--FVGFSHGVRYVI 120
Query: 360 APGVTVVNSPKQKDELIIEGN---SLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
G+ + PK +L+I+G+ + V++ I++ K K I F+ G YV K
Sbjct: 121 PEGIE-IKCPK-PTQLVIKGSDKVKVHMVAADICSIRRYDPYKGKGI--FVKGEYVYRK 175
>UniRef50_Q6E783 Cluster: Ribosomal protein L6; n=5; Oomycetes|Rep:
Ribosomal protein L6 - Saprolegnia ferax
Length = 204
Score = 36.3 bits (80), Expect = 0.72
Identities = 30/140 (21%), Positives = 60/140 (42%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
+K++IP + + +K + ++GP G + N H N LL +K+ +
Sbjct: 31 EKIRIPKNINIVLKKNQLILQGPLGSIDLNIMHSLNYFIKNNNILLSFNSLHLKRKKKSF 90
Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
+ S ++ IKG+ +GF K+ E N I++ LG + +++
Sbjct: 91 LNLYKSLIKLKIKGILQGF--KLNLFLKGLGFKAFIEEKNLILK----LGYSHSITIEIP 144
Query: 363 PGVTVVNSPKQKDELIIEGN 422
+ ++N Q ++LI N
Sbjct: 145 ENIKIIN---QTNKLIFSSN 161
>UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10;
Firmicutes|Rep: 50S ribosomal protein L6 - Lactobacillus
acidophilus
Length = 176
Score = 36.3 bits (80), Expect = 0.72
Identities = 37/151 (24%), Positives = 67/151 (44%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+++PD +TV + +TVKGP+G L R F + N + + S+ + A
Sbjct: 9 IEVPDSVTVTKEGDNITVKGPKGELTRYFDPKITFEQ--NDGEINFSR--SSESDKALHG 64
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
T +++ +MI+GV G++ ++ + + +GN I L Y V +
Sbjct: 65 TERANLASMIEGVLNGYKKTLKLIGVGYR---AQAQGNKIT-----LNVGYSHPVVLTAP 116
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
V ++ +EG S +DV AA I+
Sbjct: 117 EGVSVKATSATDVEVEGVSKQDVGQFAAEIR 147
>UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3;
Planctomycetaceae|Rep: 50S ribosomal protein L6 -
Rhodopirellula baltica
Length = 181
Score = 35.9 bits (79), Expect = 0.95
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH-----LAVDIRMVNPRLLKVEKWFGSKKE 173
V IP G+TV + R + V+GP+G K +FKH +AVD N ++ + +E
Sbjct: 9 VAIPSGVTVSIADRNIDVEGPKG--KLSFKHRPEVKVAVD-SDTNQVIVSRDGDDRPSRE 65
Query: 174 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 353
+ V NM+ GV G++ K+ V + + + +++R + R++
Sbjct: 66 FHGLTRAI--VANMLVGVKDGYEKKLEIV----GVGYLASISGDTLQLRVGYANELHRKI 119
Query: 354 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
P V P Q ++I+G + V AA I+
Sbjct: 120 ---PTDLTVTCPDQ-THVVIQGCDKQSVGQFAAEIR 151
>UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex
aeolicus|Rep: 50S ribosomal protein L6 - Aquifex
aeolicus
Length = 183
Score = 35.9 bits (79), Expect = 0.95
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 9 VKIPDGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELA 179
+ P+ + V+ K + V+GP+G L+ N H + + + R +K+++ A
Sbjct: 9 IPYPENVKVNYVEKEHKIVVEGPKGKLELNV-HPDIKVTVNQQERWIKLDRPTDRSFHKA 67
Query: 180 AVRTVCSHVENMIKGVTKGF 239
T+ + V+NMIKGVT+GF
Sbjct: 68 IHGTMAALVKNMIKGVTEGF 87
>UniRef50_Q8DML8 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Synechococcus
elongatus (Thermosynechococcus elongatus)
Length = 187
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ +P +T+ + + VTVKGP+G L R F ++ +V V K +
Sbjct: 9 IPLPKNVTLTLDGQQVTVKGPKGQLSRVF---PPEVNVVQEGEAIVVKRRDDSRPAKERH 65
Query: 189 TVC-SHVENMIKGVTKGFQYKM 251
+C + + NM++GV++GF K+
Sbjct: 66 GLCRTLLANMVEGVSQGFTKKL 87
>UniRef50_Q1XDI8 Cluster: Chloroplast 50S ribosomal protein L6; n=4;
cellular organisms|Rep: Chloroplast 50S ribosomal
protein L6 - Porphyra yezoensis
Length = 180
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ +P L+ + +TV GP+G L R +++ ++N + K G K + +
Sbjct: 9 ILLPTNLSTQFDGQTITVTGPKGTLSRTLP-AGINLEILNDTI--AVKTSGQTKMASQLH 65
Query: 189 TVC-SHVENMIKGVTKGFQYKMR 254
+ + + NMI+GV+ GF K++
Sbjct: 66 GLSRTLISNMIEGVSNGFFKKLQ 88
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 652 LAVVLQRRDWENPG 693
LAVVLQRRDWENPG
Sbjct: 68 LAVVLQRRDWENPG 81
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 652 LAVVLQRRDWENPG 693
LAVVLQRRDWENPG
Sbjct: 22 LAVVLQRRDWENPG 35
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 652 LAVVLQRRDWENPG 693
LAVVLQRRDWENPG
Sbjct: 26 LAVVLQRRDWENPG 39
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 652 LAVVLQRRDWENPG 693
LAVVLQRRDWENPG
Sbjct: 8 LAVVLQRRDWENPG 21
>UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 946
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 220 LIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTA--KCLKFLLRTPRGPLTVTRR 47
L +F+ C ++V+ A+S L P+H + R GF + TA + FL R PL + R
Sbjct: 22 LELFAACRESVVHVAASHLLPDHVAVTTRNGFVELIDTATGEFRLFLTYLDRIPLDASLR 81
Query: 46 DFT 38
F+
Sbjct: 82 CFS 84
>UniRef50_Q7NEG7 Cluster: 50S ribosomal protein L6; n=19;
Bacteria|Rep: 50S ribosomal protein L6 - Gloeobacter
violaceus
Length = 191
Score = 33.9 bits (74), Expect = 3.8
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG--SKKELAA 182
+ IP + V + R V VKGP+G L +V++ + RLL + ++++
Sbjct: 9 IAIPPKVEVTLDGRRVVVKGPKGTLDLTLPD-SVEVVREDGRLLVTRRGESRRAREQHGL 67
Query: 183 VRTVCSHVENMIKGVTKGFQYKMR 254
RT+ V NM+ GVT GF M+
Sbjct: 68 GRTL---VANMVTGVTTGFTKPMQ 88
>UniRef50_Q8XPL8 Cluster: Putative surface-exposed adhesin protein;
n=1; Ralstonia solanacearum|Rep: Putative
surface-exposed adhesin protein - Ralstonia solanacearum
(Pseudomonas solanacearum)
Length = 1309
Score = 33.5 bits (73), Expect = 5.1
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 420 NSLEDVSSSAALIQQSTTVKNKDIRKFLDG 509
NS++ +SSSA+L+QQS K+ + K LDG
Sbjct: 150 NSIKSISSSASLVQQSAAGKDITVAKDLDG 179
>UniRef50_Q6Q8X3 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
uncultured marine gamma proteobacterium EBAC20E09
Length = 182
Score = 33.5 bits (73), Expect = 5.1
Identities = 30/152 (19%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAV 185
+ IP+ + + + +V VKG +G L +++D+ +++ ++ +++ +A
Sbjct: 9 ITIPENVDLSINENVVIVKGSKGELDFVLPDTISLDVA---DKVITIKYDEENQQSVALA 65
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 365
T S + NM+ GV++GF+ K+ + + ++E+ LG + + ++ P
Sbjct: 66 GTSRSLINNMVIGVSEGFEKKLELIGVGYRAKA----SGKLLELT--LGFSHPVKYQL-P 118
Query: 366 GVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
V +P Q E++++ ++ + + +AA I+
Sbjct: 119 DEVEVETPSQ-TEVVLKSHNKQILGQAAAEIR 149
>UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Mesorhizobium sp. (strain BNC1)
Length = 177
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLK 86
V +P G+T +V ++VT KGP+G LK
Sbjct: 9 VPVPQGVTANVDGQVVTAKGPKGELK 34
>UniRef50_Q1MPQ0 Cluster: 50S ribosomal protein L6; n=1; Lawsonia
intracellularis PHE/MN1-00|Rep: 50S ribosomal protein L6
- Lawsonia intracellularis (strain PHE/MN1-00)
Length = 181
Score = 33.5 bits (73), Expect = 5.1
Identities = 35/152 (23%), Positives = 70/152 (46%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
+ IP G+ + + +++KGP+ L L + +L F +++ LA
Sbjct: 9 IMIPAGVEITFGEKNISIKGPKATLVTPKCELLSYEHKEDKIILTCN--FDTRESLAQYG 66
Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
+ + N I+GVTKGF + + + V+ +GN I+E+ +G + +++ G
Sbjct: 67 LRRTLLANCIEGVTKGFSKTLEVIGVGYR---VSVKGN-IVELS--VGYSHPVHIELPDG 120
Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 464
+T + + +L I G+ V AA I++
Sbjct: 121 IT---AKAEGQKLTIMGSDKVLVGEMAARIRR 149
>UniRef50_Q4G353 Cluster: Chloroplast 50S ribosomal protein L6; n=2;
Eukaryota|Rep: Chloroplast 50S ribosomal protein L6 -
Emiliania huxleyi
Length = 181
Score = 33.5 bits (73), Expect = 5.1
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Frame = +3
Query: 3 QKVKIPDGLTVHVKSRLVTVKGPRGVLKR---NFKHLAVDIRMVNPRLLKVEKWFGSKKE 173
Q + IPD + + ++ + V V GP+G L R +F +D L K E+ S+
Sbjct: 7 QYISIPDKVNIRLEGQKVFVDGPKGKLTRILPSFICCTIDEPEKKVFLEKAEENKLSQAL 66
Query: 174 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 353
RT+ S NM+ GV+ G+ K+ + +G +I L Y V
Sbjct: 67 YGLSRTLLS---NMVTGVSSGWHKKLTIAGVGYR---AQLDGKDLI-----LNMGYSHPV 115
Query: 354 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQ 461
KM + S + + + G E V AA I+
Sbjct: 116 KMVTPPALSVSVESPTSITVSGLEKEAVGEFAAKIR 151
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2
Query: 602 GGPRYPIRPIVSRIT 646
GG RYPIRPIVSRIT
Sbjct: 261 GGARYPIRPIVSRIT 275
>UniRef50_Q74L75 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Lactobacillus
johnsonii
Length = 176
Score = 33.1 bits (72), Expect = 6.7
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFGSKKELAAV 185
+++P+ +TV +TVKGP+G L R F D R+ + ++ S+ + A
Sbjct: 9 IEVPEKVTVTKNGDDITVKGPKGELTRYF-----DPRITFEQKDGEIHFSRSSEADKALH 63
Query: 186 RTVCSHVENMIKGVTKGFQYKMRAV 260
T +++ +MI+GVT G+ K+ V
Sbjct: 64 GTERANLASMIEGVTDGYVKKLTLV 88
>UniRef50_UPI000049A156 Cluster: ankyrin; n=9; Entamoeba histolytica
HM-1:IMSS|Rep: ankyrin - Entamoeba histolytica HM-1:IMSS
Length = 866
Score = 32.7 bits (71), Expect = 8.8
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +3
Query: 90 NFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAH 269
+F LAVD ++N +L+K + ++K + T+ HV +K + G Y Y
Sbjct: 683 DFPELAVDDEILNKKLIKYNNEWNAQKRMEIFSTIVGHVGEHVKMI--GPFYCNFGRYIS 740
Query: 270 FPINCVTTEGNSIIE 314
NC+ +I+E
Sbjct: 741 IGDNCIINFNCTILE 755
>UniRef50_Q1ZBZ7 Cluster: 50S ribosomal protein L6; n=1;
Psychromonas sp. CNPT3|Rep: 50S ribosomal protein L6 -
Psychromonas sp. CNPT3
Length = 128
Score = 32.7 bits (71), Expect = 8.8
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 24 GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSH 203
G+ V V + +T+KG +G L R AV +++ + ++ G K A T ++
Sbjct: 14 GVEVKVNGQEITLKGGKGELVRTLND-AVVVKLEDG-VITFAPVEGIKDAWAQAGTARAN 71
Query: 204 VENMIKGVTKGFQ 242
V NM+ GVT GF+
Sbjct: 72 VNNMMIGVTTGFK 84
>UniRef50_Q4UCX9 Cluster: Glutamate-cysteine ligase, putative; n=1;
Theileria annulata|Rep: Glutamate-cysteine ligase,
putative - Theileria annulata
Length = 795
Score = 32.7 bits (71), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 372 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRK 497
TVV P + ++ G+S+ED + + +++TT KDI K
Sbjct: 76 TVVTGPTTTNSTVVPGSSMEDSTVPNTVTEENTTTTTKDIIK 117
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,905,759
Number of Sequences: 1657284
Number of extensions: 12955049
Number of successful extensions: 31463
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 30529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31389
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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