Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0274
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   236   1e-62
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.79 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   1.0  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   5.5  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  236 bits (578), Expect = 1e-62
 Identities = 107/180 (59%), Positives = 139/180 (77%)
 Frame = +3

Query: 9   VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 188
           V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG +KELAA+R
Sbjct: 10  VVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIR 69

Query: 189 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 368
           TVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  G
Sbjct: 70  TVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEG 129

Query: 369 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 548
           V    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 130 VIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 232 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 95
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 99  HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 263
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 264 AHF 272
            +F
Sbjct: 421 LNF 423


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 539 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQ 426
           +N+C LR IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 548 VI*HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 435
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 225  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 110 NSQVFKVPFENSAGPFNCHQTRFHMDR 30
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 110 NSQVFKVPFENSAGPFNCHQTRFHMDR 30
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,207
Number of Sequences: 27780
Number of extensions: 309231
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)