Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0274
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   210   7e-55
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   208   2e-54
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   208   2e-54
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    39   0.004
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   5.1  
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   6.8  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   9.0  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  210 bits (513), Expect = 7e-55
 Identities = 99/187 (52%), Positives = 134/187 (71%), Gaps = 5/187 (2%)
 Frame = +3

Query: 3   QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSK 167
           + + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK++ WFGS+
Sbjct: 8   ETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSR 67

Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
           K  A++RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R
Sbjct: 68  KTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVR 127

Query: 348 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
           +V+M  GV +V S K KDE+I+EGN +E VS S ALI Q   VK KDIRKFLDG+YVSEK
Sbjct: 128 KVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK 187

Query: 528 TTVVLDD 548
             + +++
Sbjct: 188 GKIAVEE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  208 bits (509), Expect = 2e-54
 Identities = 97/187 (51%), Positives = 136/187 (72%), Gaps = 5/187 (2%)
 Frame = +3

Query: 3   QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSK 167
           + + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++
Sbjct: 8   ETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTR 67

Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
           K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R
Sbjct: 68  KTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVR 127

Query: 348 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
           +V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK
Sbjct: 128 KVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK 187

Query: 528 TTVVLDD 548
           + +V ++
Sbjct: 188 SKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  208 bits (509), Expect = 2e-54
 Identities = 97/187 (51%), Positives = 136/187 (72%), Gaps = 5/187 (2%)
 Frame = +3

Query: 3   QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSK 167
           + + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++
Sbjct: 8   ETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTR 67

Query: 168 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 347
           K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R
Sbjct: 68  KTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVR 127

Query: 348 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 527
           +V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK
Sbjct: 128 KVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK 187

Query: 528 TTVVLDD 548
           + +V ++
Sbjct: 188 SKIVEEE 194


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 31/154 (20%), Positives = 69/154 (44%)
 Frame = +3

Query: 3   QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 182
           Q + +P  +T+ ++ + + VKGP G L   +    V++       L+V+K   +++    
Sbjct: 49  QPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQM 107

Query: 183 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 362
                +  +NM+ GV+KGF+ K+  V   +     T +G  ++     L   +   VKM 
Sbjct: 108 HGLFRTLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPVKMQ 159

Query: 363 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 464
              ++    ++   + + G    ++   AA +++
Sbjct: 160 IPDSLKVKVEENTRITVSGYDKSEIGQFAATVRK 193


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 3   QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 146
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 273 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 452
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 453 LIQQSTTVKNK 485
            +QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 330 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 497
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 498 FLDG 509
            +DG
Sbjct: 696 VIDG 699


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,873
Number of Sequences: 28952
Number of extensions: 286414
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)