Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0271
(560 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 96 4e-19
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 83 4e-15
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 82 8e-15
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 77 3e-13
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 73 6e-12
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 65 9e-10
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 60 3e-08
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 60 3e-08
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 59 6e-08
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 57 3e-07
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 55 1e-06
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 54 2e-06
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 54 2e-06
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 53 4e-06
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 6e-04
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 44 0.002
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 44 0.002
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 44 0.003
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 43 0.004
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 42 0.013
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 37 0.37
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 36 0.65
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 2.0
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 34 2.0
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 33 3.4
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 33 3.4
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_A2DVU5 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_Q8JKL3 Cluster: Orf100; n=1; Heliothis zea virus 1|Rep:... 33 6.0
UniRef50_A7HCT1 Cluster: YD repeat protein; n=3; Anaeromyxobacte... 33 6.0
UniRef50_Q22A17 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 6.0
UniRef50_A7TJM6 Cluster: Putative uncharacterized protein; n=1; ... 32 8.0
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 96.3 bits (229), Expect = 4e-19
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D++G
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 221 IHSSVQESKGYQK 259
+ +++ K Q+
Sbjct: 64 FTAVLKKGKYAQR 76
Score = 84.2 bits (199), Expect = 2e-15
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = +3
Query: 216 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 395
KGFT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+
Sbjct: 62 KGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAV 121
Query: 396 LRSQRP 413
LRSQ+P
Sbjct: 122 LRSQKP 127
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 83.0 bits (196), Expect = 4e-15
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D +
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 218 GIHSSVQESKGYQK 259
G + + +K K
Sbjct: 61 GFVVTTKRAKQQNK 74
Score = 70.1 bits (164), Expect = 3e-11
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +3
Query: 213 GKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 392
GKGF V K+AK KP K+ I AG RRSLYK++R L YR DL + LR+ASA
Sbjct: 59 GKGFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASA 118
Query: 393 ILRSQR 410
IL SQ+
Sbjct: 119 ILESQK 124
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 82.2 bits (194), Expect = 8e-15
Identities = 35/76 (46%), Positives = 54/76 (71%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 211
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAE 59
Query: 212 REGIHSSVQESKGYQK 259
++G++ K K
Sbjct: 60 KKGVNFVYNRKKVLNK 75
Score = 72.9 bits (171), Expect = 5e-12
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +3
Query: 216 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 395
KG VY + K KPAK ++ K G RR+L K+ ++KAN YR DL A LRRASAI
Sbjct: 61 KGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASAI 120
Query: 396 LRSQRP 413
LRSQRP
Sbjct: 121 LRSQRP 126
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 77.0 bits (181), Expect = 3e-13
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P +
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 218 GIHSSVQESKGYQK 259
G+ + +++K K
Sbjct: 59 GVVITTRKNKAANK 72
Score = 55.6 bits (128), Expect = 7e-07
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +3
Query: 210 TGKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRAS 389
+GKG + +K KA KP K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 56 SGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRAC 115
Query: 390 AILRSQRP 413
AILRSQ+P
Sbjct: 116 AILRSQKP 123
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 72.5 bits (170), Expect = 6e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D +
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 218 GIHSSVQESKGYQK 259
G+ ++ G +K
Sbjct: 59 GVVVVIKRRSGQRK 72
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3
Query: 213 GKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 392
GKG VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASA
Sbjct: 57 GKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASA 116
Query: 393 ILRSQRPI 416
ILRSQ+P+
Sbjct: 117 ILRSQKPV 124
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 70.9 bits (166), Expect = 2e-11
Identities = 27/69 (39%), Positives = 49/69 (71%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+ +G
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 221 IHSSVQESK 247
+ + + +K
Sbjct: 63 VVITTKNAK 71
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 65.3 bits (152), Expect = 9e-10
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 209 DREGIHSSVQESKGYQK 259
D +G+ + SK K
Sbjct: 61 DNKGVLFKTKRSKVVSK 77
Score = 56.8 bits (131), Expect = 3e-07
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +3
Query: 216 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 395
KG K++K KPAK +R RR+ +K+ L+ YR DL + +RRASAI
Sbjct: 63 KGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRASAI 122
Query: 396 LRSQRP 413
L SQRP
Sbjct: 123 LSSQRP 128
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 221 IHSSVQESKGYQKAR*KLN 277
+ + ++K K + +N
Sbjct: 68 VVLATTKTKKQNKPKLSVN 86
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 60.1 bits (139), Expect = 3e-08
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +2
Query: 62 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREGIHSSVQE 241
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D + + SV++
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 242 S 244
+
Sbjct: 62 T 62
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 59.3 bits (137), Expect = 6e-08
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V + +
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 218 GIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSEEVVKG 340
G+ KG K +L + + V +KG
Sbjct: 62 GVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKG 102
Score = 58.4 bits (135), Expect = 1e-07
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 210 TGKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRA 386
+GKG T VY K KPAK L R G RR++ ++ +K +YR DL + RRA
Sbjct: 59 SGKGVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRA 118
Query: 387 SAILRSQRPI 416
SAIL+SQR I
Sbjct: 119 SAILKSQRAI 128
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 56.8 bits (131), Expect = 3e-07
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E +
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 218 GI 223
G+
Sbjct: 59 GV 60
Score = 39.9 bits (89), Expect = 0.040
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +3
Query: 213 GKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 362
GKG V K KPAK + R F G RR+L K++ L YR +L
Sbjct: 57 GKGVVVTTKNVAKDHKPAKAVTRTKFVRGRRRTLQKIRNLTCKQKYRREL 106
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+GV
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIGV 61
Score = 42.7 bits (96), Expect = 0.006
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 219 GFTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 392
G V+ KK+ ++P KN +R F KA R+ V N YR DL + + R SA
Sbjct: 68 GVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVSA 127
Query: 393 ILRSQRP 413
I RSQ+P
Sbjct: 128 IRRSQKP 134
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVGV
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVGV 61
Score = 42.3 bits (95), Expect = 0.007
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 219 GFTVVYKKAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASA 392
G V+ KK ++PAKNL+ + A R +YK V N YR DL + + R SA
Sbjct: 68 GVVVITKKPGNPQQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVSA 127
Query: 393 ILRSQRP 413
I RSQ+P
Sbjct: 128 IRRSQKP 134
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + +
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 218 GIHSSVQESKG 250
G+ S + KG
Sbjct: 59 GVVVSTKNEKG 69
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 53.2 bits (122), Expect = 4e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 209 DREGIHSSVQESKGYQK 259
R + + K QK
Sbjct: 61 PRGVVLITKTNPKNAQK 77
Score = 39.9 bits (89), Expect = 0.040
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 216 KGFTVVYK-KAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRA 386
+G ++ K K +KPAK L R+ A A R YK + + YR DL K ++ RA
Sbjct: 62 RGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARA 120
Query: 387 SAILRSQRP 413
SAIL SQRP
Sbjct: 121 SAILSSQRP 129
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 6e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 199
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 44.4 bits (100), Expect = 0.002
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGV 100
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V +
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI 52
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDV 51
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 43.2 bits (97), Expect = 0.004
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +3
Query: 204 TLTGKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 383
+++ K T+ K KAT+KPAK P + GAR ++ + N+YR DL KA L +
Sbjct: 53 SISDKKVTLTTKIEKATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAK 112
Query: 384 ASAI 395
S +
Sbjct: 113 WSRL 116
Score = 39.9 bits (89), Expect = 0.040
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV +
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVDI 52
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 41.5 bits (93), Expect = 0.013
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.5 bits (93), Expect = 0.013
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 160
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
Score = 38.7 bits (86), Expect = 0.092
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 219 GFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRRASA 392
G + KK +++PAK+L + GA R +YK V N YR DL + + R SA
Sbjct: 103 GVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKNGYRADLRQEAVSRVSA 162
Query: 393 ILRSQR 410
I RSQ+
Sbjct: 163 IRRSQK 168
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 36.7 bits (81), Expect = 0.37
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHD 64
Query: 209 DREGIHSSVQESK 247
+G ++ + K
Sbjct: 65 GGKGKPAATCDGK 77
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 35.9 bits (79), Expect = 0.65
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 214
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR 59
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 2.0
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 44 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 142
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 34.3 bits (75), Expect = 2.0
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGL 172
L W ++RNN+AFL K R FS E +N+ + HS R+ L
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFTVL 58
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 33.5 bits (73), Expect = 3.4
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 519 RGGARYPIRPIVSR 560
RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 33.5 bits (73), Expect = 3.4
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 35 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVE 202
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLE 93
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 33.5 bits (73), Expect = 3.4
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREGIHS 229
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P I
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSPSGSKI-- 82
Query: 230 SVQESKGYQKAR 265
V S Q AR
Sbjct: 83 -VLTSMDLQNAR 93
>UniRef50_A2DVU5 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 190
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 44 SSLNWMIIRNNNAFLVKKRNIKKPFSK-EPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
S+ N I NN AF +N+ F+ P + + RY G I + G VE REG
Sbjct: 2 SAQNTSIFVNNIAFSASTQNLGDAFAAIAPVKSARIITMRYRGKIMSRGFGFVEFTTREG 61
Query: 221 IHSSVQ 238
+ +++
Sbjct: 62 LEKALK 67
>UniRef50_Q8JKL3 Cluster: Orf100; n=1; Heliothis zea virus 1|Rep:
Orf100 - Heliothis zea virus 1
Length = 298
Score = 32.7 bits (71), Expect = 6.0
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 210 TGKGFTVVYKKAKATRKPAKNLIRRPF 290
TG VYKKA A RKP++ +IR PF
Sbjct: 269 TGARLCDVYKKAVAVRKPSRLVIRNPF 295
>UniRef50_A7HCT1 Cluster: YD repeat protein; n=3; Anaeromyxobacter sp.
Fw109-5|Rep: YD repeat protein - Anaeromyxobacter sp.
Fw109-5
Length = 6109
Score = 32.7 bits (71), Expect = 6.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 167 GLIHKKAVGVVENPDREGIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSE 325
GL H V V P+ G +S+Q S Q+ + + PP ++ W QE +Q E
Sbjct: 2617 GLPHLHEVVFVARPEA-GSSASIQLSMRAQRGQTVIAPPVLENWGQETPIQGE 2668
>UniRef50_Q22A17 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1648
Score = 32.7 bits (71), Expect = 6.0
Identities = 29/129 (22%), Positives = 52/129 (40%)
Frame = +2
Query: 92 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREGIHSSVQESKGYQKAR*K 271
+K NI + FS++ N + +VE D E +HSS Q Y+ + K
Sbjct: 1454 QKSNINQQFSQQSEASNNQKTKLEQKATKNNLSDIVEQNDEENLHSSRQNF--YKNSENK 1511
Query: 272 LNPPSIQGWCQEVTVQSEEVVKG*PLPHRPMQGYPSSCFSHPPLPEAHQSKKG*DSRNQV 451
I+ +C+E+ Q+ +++ L + S F + + K D N V
Sbjct: 1512 EKLVQIKSFCKEILQQTLNIIQADQLLELRINPVFSDVFK---ITQIFNEKYTQDEENNV 1568
Query: 452 GIICKRLIN 478
I ++I+
Sbjct: 1569 FIFKSKIID 1577
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 214
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A7TJM6 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 490
Score = 32.3 bits (70), Expect = 8.0
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
++ SLN I +N + +K++N+K P K N TN + + N + N +
Sbjct: 121 LTKSLNSNIKKNEASTTIKRQNVKTPKVKN-INTTNADNKKKNSSVSNNLSNSNTNSNTP 179
Query: 218 GIHSSVQESKGYQKAR*KLNPPSI 289
+ + K++ K+N PSI
Sbjct: 180 NSNKKSKTDSPKVKSKGKINKPSI 203
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,964,306
Number of Sequences: 1657284
Number of extensions: 10726907
Number of successful extensions: 28185
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28153
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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