Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0271
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    53   3e-08
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   3.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   5.8  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +2

Query: 32  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 209 DREGIHSSVQESKGYQK 259
            R  +  +    K  QK
Sbjct: 61  PRGVVLITKTNPKNAQK 77



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +3

Query: 216 KGFTVVYK-KAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRA 386
           +G  ++ K   K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ RA
Sbjct: 62  RGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARA 120

Query: 387 SAILRSQRP 413
           SAIL SQRP
Sbjct: 121 SAILSSQRP 129


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 446 GCGCLSLFCFDGPLG 402
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 151
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,736
Number of Sequences: 5004
Number of extensions: 42343
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)