Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0271
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 58 4e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 56 2e-08
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 56 2e-08
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.5
09_02_0336 - 7397745-7398308,7398813-7400723 29 3.4
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 3.4
02_01_0746 + 5554686-5556179 29 3.4
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 29 3.4
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 7.7
03_06_0171 - 32130598-32130796,32130965-32131355,32131366-32131876 27 7.7
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +2
Query: 47 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTV 59
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 183 KPLVSWRTLTGKGFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRT 356
K V+ + +GK VV K + KPA + + R+ VK + N+YR
Sbjct: 54 KKTVTVQPASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRP 113
Query: 357 DLCKATLRRASAILRS 404
DL K L R SA+ RS
Sbjct: 114 DLTKPALARLSAVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 240 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 404
K K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59
Score = 35.5 bits (78), Expect = 0.029
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 183 KPLVSWRTLTGKGFTVVYK--KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRT 356
K V+ + GK VV K K PAK + + R+ VK + N+YR
Sbjct: 54 KKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRP 113
Query: 357 DLCKATLRRASAILRS 404
DL K L R S++ RS
Sbjct: 114 DLTKPALARLSSVYRS 129
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 29 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 160
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 34 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 135
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 148 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 38
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>02_01_0746 + 5554686-5556179
Length = 497
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 201 RTLTGKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANH 347
+ L G+ +V+ A R+PA + I R + G RR + A H
Sbjct: 272 KNLRGERLLIVFDNVDARRRPAVDAIMRALRRGGRRGSKVIVTSSDARH 320
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 364 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 459
A PF + +S+PR P + RQP P R++
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 71 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>03_06_0171 - 32130598-32130796,32130965-32131355,32131366-32131876
Length = 366
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 157 QVQRLDSQESRWCRGEP*QGR 219
QV ++D E RWCR + GR
Sbjct: 223 QVHKMDFSEQRWCRADDLGGR 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,290,731
Number of Sequences: 37544
Number of extensions: 313412
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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