Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0271
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        56   3e-08
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      36   0.030
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    31   0.64 
SB_36713| Best HMM Match : ResIII (HMM E-Value=1)                      31   0.85 
SB_650| Best HMM Match : rve (HMM E-Value=0.00048)                     28   4.5  
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       27   7.9  
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)                   27   7.9  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   7.9  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)
 Frame = +3

Query: 210 TGKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRAS 389
           +GKG  +  +K KA  KP K + +      +RR+L  ++ +   N+YR DL    +RRA 
Sbjct: 9   SGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRAC 68

Query: 390 AILRSQRP 413
           AILRSQ+P
Sbjct: 69  AILRSQKP 76


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +1

Query: 31  RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESRWCRGEP 207
           R NV     D +P+  C PCE + Y+  +Q+G EQ   PP+L+     ++E  +C  +P
Sbjct: 55  RVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILRSWTPHTEEGCFCEAKP 108


>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 219

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 473 LSAY-KLFRLGCGCLSLFCFDGPLG 402
           + AY +  R+GC CL L C+DGP G
Sbjct: 86  VEAYVRCLRMGCRCLELDCWDGPDG 110


>SB_36713| Best HMM Match : ResIII (HMM E-Value=1)
          Length = 433

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +1

Query: 10  GVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESR 189
           G+ +G+N+ +V      D  Q     C +A Y KAV  G    +  P    +R       
Sbjct: 232 GLRLGVNKHSVAAHVEADPSQDVLRVCTDAIYAKAVPSGVRLVERNPRYGERRHKRPGYE 291

Query: 190 WCRGEP*QGRDSQ*C-TRKQRLPESPLKT*SAVHSRLVPGG 309
           W R E   G     C  R+ R P  P    +A  +R+   G
Sbjct: 292 W-RPEAAWGPKRSGCLAREPREPSLPCDLVAATSARMYLAG 331


>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
          Length = 363

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 1   VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 120
           V  G+E   N +N+ +T    +  P Q  +PC +A Y+  VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280


>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 213 GKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 392
           GKG +  +K   A +KPAK  ++   KA  ++     K   KA   +    K T ++A +
Sbjct: 106 GKGASGSFKLTAAAKKPAKKAVKPKKKATPKKKKPAAKPKKKATPKKKAAAKKT-KKAKS 164

Query: 393 ILRSQRP 413
             +++ P
Sbjct: 165 PKKAKSP 171


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 234 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 392
           YK AKA  KPAK    L +  +K A A+  L K K +L KA H    L KA  + A A
Sbjct: 278 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 332


>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
          Length = 169

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 234 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 392
           YK AKA  KPAK    L +  +K A A+  L K K +L KA H    L KA  + A A
Sbjct: 65  YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 119


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 YQKAR*KLNPPSIQGWCQEVTV 316
           YQK    LNP S  GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,321
Number of Sequences: 59808
Number of extensions: 351278
Number of successful extensions: 911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)