Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0271
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    54   5e-08
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   3.0  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   5.3  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +2

Query: 38  MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRE 217
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   +
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 218 GIHSSVQESKG 250
           G+  S +  KG
Sbjct: 59  GVVVSTKNEKG 69


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 346 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 447
           +T  T  R P ++  PSS P GPSK    + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 135 LFGSLLNGFLILRFFTRNALLLRMIIQFS 49
           L  SL+NG  I  FF  N LL  +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 177
           ++ +D  Q    PCE  QYQK   +    C  PP + V + D+
Sbjct: 59  SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 111 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 10
           +L +RFF  N L+  M ++  DDDI    T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,479
Number of Sequences: 27780
Number of extensions: 252350
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)