Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0271
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.056
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.69 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   3.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 343  TTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 459
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 68  RNNNAFLVKKRNIKKPFSKEP 130
           R N+  L+KKRN   PF K P
Sbjct: 8   RINSCDLLKKRNENDPFLKRP 28


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 279 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 407
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 68  RNNNAFLVKKRNIKKPFSK 124
           R N+  L+KKRN   PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 181 LVNQAVVPEGVEVSHIVRLLAERLFDIALLHKECIV 74
           L+N A +   V + +   L  +++FDI LL   C++
Sbjct: 88  LINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 161  YNGLIHKKAVGVVENPDREGIHSSVQESKGYQKAR*KLNPPSIQG 295
            Y+  ++K +     NPD++     +++S   Q  + +  PP ++G
Sbjct: 959  YSSFLYKSSESSC-NPDQKPTEYLLEDSMKQQYGKRRKEPPWLEG 1002


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 279 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 407
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 35  KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
           K+ SSL+   I NNN +     N     +   NN  N     Y  +I+ + + V
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPV 366


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 388  QPSSAPRGPSKQKRLRQPQPSR 453
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,329
Number of Sequences: 438
Number of extensions: 2785
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)