Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0271
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            60   8e-10
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    56   2e-08
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    29   1.6  
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.8  
At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family prot...    27   8.6  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 50  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +      + 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 221 IHSSVQESKGYQKAR*KLN 277
           +  +  ++K   K +  +N
Sbjct: 68  VVLATTKTKKQNKPKLSVN 86



 Score = 30.7 bits (66), Expect = 0.70
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 240 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 410
           K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +  R
Sbjct: 74  KTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +2

Query: 50  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDREG 220
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 221 IHSSVQESKGYQKAR*KLN 277
           +     ++K   K +  +N
Sbjct: 68  VVLGTTKTKRQNKPKLSVN 86



 Score = 31.1 bits (67), Expect = 0.53
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 216 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 395
           +G  +   K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI
Sbjct: 66  QGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAI 125

Query: 396 LRSQR 410
            +  R
Sbjct: 126 SKGLR 130


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 353 HRPMQGYPSSCFSHPPLPEAHQ 418
           H P   Y  SC+ HPP P  +Q
Sbjct: 73  HPPHASYAPSCYVHPPFPVGYQ 94


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 97  AQYQKAVQQGAEQCD*PPLLQVQRLDSQESRWCRG 201
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 300

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 370 LPFVVLQPSSAPRGPSKQKRLRQPQP 447
           +PF+ + PS A       KRLR P+P
Sbjct: 63  MPFLPISPSHASTSTEDLKRLRPPKP 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,877,303
Number of Sequences: 28952
Number of extensions: 236650
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)