Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0270
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    44   0.004
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.18 
UniRef50_Q4JN45 Cluster: Predicted isoleucyl-tRNA synthetase; n=...    35   2.2  
UniRef50_Q22WL2 Cluster: Zinc finger domain, LSD1 subclass famil...    34   3.8  
UniRef50_Q6FX55 Cluster: Similarities with sp|P36170 Saccharomyc...    34   3.8  
UniRef50_Q7SAA4 Cluster: Putative uncharacterized protein NCU063...    33   6.6  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 437 SLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRF 544
           SL T G +++   R  PLSFSPDLLSGSRFR+G  +
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415



 Score = 39.9 bits (89), Expect = 0.057
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 73  AEWWYLPVRTRKRSYHQ 123
           AEWWYLP RT KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = +2

Query: 485 PLSFSPDLLSGSRFRSGGRFCEARLLLEFVLA 580
           P+ F       SRFRS GRFCEA LLL  VLA
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLA 105



 Score = 35.9 bits (79), Expect = 0.93
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 336 KQSTSPKHVISDPPDPLTVLLGTSSTGH 419
           K    P HV+SDP D L+VLL  SSTG+
Sbjct: 32  KSRRHPNHVLSDPRDSLSVLLDLSSTGY 59



 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 469 NPQAQPTEFLAGPSQWVAFPIRW*ILRSTALVRVRVSNVVRFEPRELP 612
           NP+ QP +FLAG SQ   F        +  L+ + ++N +R  P ELP
Sbjct: 69  NPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELP 116


>UniRef50_Q4JN45 Cluster: Predicted isoleucyl-tRNA synthetase; n=3;
            Bacteria|Rep: Predicted isoleucyl-tRNA synthetase -
            uncultured bacterium BAC13K9BAC
          Length = 925

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -3

Query: 373  GSEMTCLGDVDCFPFCPQDRECSAVTLSYIGFF*ISCHCVTISDISRKHCTDDGLNK-CI 197
            GS + C   + C      D    +  L ++ F   SC+ +T+ D S  +  DD LNK  I
Sbjct: 821  GSSLECELSITCNKHLYNDLSKLSDELKFV-FIVSSCN-ITLGDESDNYLIDDDLNKFSI 878

Query: 196  IMHRDRHICLGRIFCHYHLVIYIVTGGRTSCE 101
             + + ++    R + HYH  +  + G  T CE
Sbjct: 879  SISKSKYKKCERCW-HYHESVGTIEGSSTICE 909


>UniRef50_Q22WL2 Cluster: Zinc finger domain, LSD1 subclass family
            protein; n=1; Tetrahymena thermophila SB210|Rep: Zinc
            finger domain, LSD1 subclass family protein - Tetrahymena
            thermophila SB210
          Length = 2892

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 379  SGGSEMTCLGDVDCFPFCPQDRECSAVTLSYIGFF*ISCHCVTISDISRKHCTDDGLNKC 200
            SG SE  C+   D      QD++C     S  GF+    +C+  SD   + C  DG  KC
Sbjct: 1250 SGASETECI-TCDGQYLMHQDKKCKICDTSN-GFYIQDKNCIACSDGGCQTCDKDGCKKC 1307

Query: 199  I 197
            I
Sbjct: 1308 I 1308


>UniRef50_Q6FX55 Cluster: Similarities with sp|P36170 Saccharomyces
           cerevisiae YKR102w FLO10; n=3; Candida glabrata|Rep:
           Similarities with sp|P36170 Saccharomyces cerevisiae
           YKR102w FLO10 - Candida glabrata (Yeast) (Torulopsis
           glabrata)
          Length = 715

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +2

Query: 317 ILRTEWKAVDVAQTRHFGSSRSTNGAFRYLKHWSSFSSNPSLATKGSTSKLTLRHSPLSF 496
           ++ +E  +   ++T ++ SSRS + +  Y +H S  SS+P  +   ST  L+ +++   F
Sbjct: 338 LITSEPSSESSSETLYYSSSRSPSSSVSYSEHTSINSSSPISSITNSTPSLSSQYTSTKF 397

Query: 497 S 499
           S
Sbjct: 398 S 398


>UniRef50_Q7SAA4 Cluster: Putative uncharacterized protein
           NCU06327.1; n=2; Sordariales|Rep: Putative
           uncharacterized protein NCU06327.1 - Neurospora crassa
          Length = 529

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 152 PLPFSNIYSNWW*DLLRVRTGRYHHSAY 69
           P PF   ++NWW  L + RTGRYH   Y
Sbjct: 55  PGPFLAGFTNWW-RLYQTRTGRYHEIVY 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,274,986
Number of Sequences: 1657284
Number of extensions: 14151490
Number of successful extensions: 33494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33492
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)