Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0270
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    29   0.48 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   3.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.9  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   7.8  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 416 SSFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLE 568
           S  SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+E
Sbjct: 131 SEKSSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLME 181


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 636 YFSIPLTSRELTGLKPDDVANTNSNKSR 553
           Y  +PL+++ LTG K DD++N   NK +
Sbjct: 423 YSKVPLSAK-LTGEKSDDLSNLLKNKGK 449


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +3

Query: 45  THYCFTAEIGGVVVPTRADSQEVLPPVTIYITKW*WQ 155
           T +C +  IG ++      SQ     + +++ +W W+
Sbjct: 510 TMFCLSMNIGHIIPTVNVGSQRSREKMNVWLDRWAWR 546


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 265 RKFKKN-LYSLKLPLSIPDPADRMESSRRRPNTSFRIL 375
           +K+K N +Y  +LP SIP P D ++ +  R   SF +L
Sbjct: 258 KKYKPNSIYLHRLPESIPTPVDSVKINLIR-ERSFNLL 294


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 KHVISDPPDPLTVLLGTSSTGH 419
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 12  GYNGCPTLQTETHYCFTA 65
           GY  CP L +   +CF+A
Sbjct: 516 GYPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,454
Number of Sequences: 5004
Number of extensions: 57181
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)