Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0270
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)                      31   0.88 
SB_46183| Best HMM Match : PAN (HMM E-Value=0.13)                      31   0.88 
SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)              30   2.0  
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   4.7  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   6.2  

>SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 390

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 370 SEMTCLGDVDCFPFCPQDRECSAVTLSYIGFF*ISCHCVTISDISRKHC 224
           SE +   D +CF  C +D  CS+V +  I     S  C  I ++S+ +C
Sbjct: 153 SEFSVQSDFECFQKCLRDSHCSSVNIKTITE--ESSLCRLIGNVSKSNC 199


>SB_46183| Best HMM Match : PAN (HMM E-Value=0.13)
          Length = 101

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 370 SEMTCLGDVDCFPFCPQDRECSAVTLSYIGFF*ISCHCVTISDISRKHC 224
           SE +   D +CF  C +D  CS+V +  I     S  C  I ++S+ +C
Sbjct: 43  SEFSVQSDFECFQKCLRDSHCSSVNIKTITE--ESSLCRLIGNVSKSNC 89


>SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 581

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 205 YLDHHLYSASSKYRKL*RNGRKFKKNLYSLKLPLSIPDPADRMESSRRRPNTSFR 369
           Y  HH  S   K R + R  R+F  N ++ KL  ++P  A+ ++ +R   NTS R
Sbjct: 58  YKSHHKKSIMPKNRSVRRPKRRFSCNQHT-KLQETLPKIANDVDETRVDVNTSSR 111


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 374  SRSTNGAFRYLKHWSSFSSNPSLATKGST-SKLTLRHSPLSFSPDLLSGSRFRSGGRFCE 550
            SRS+  +FR   H SSF+  PS   + ST SKL+        S   LS   F  GG++ +
Sbjct: 1054 SRSSLNSFRVSPH-SSFNGKPSDGKRRSTRSKLSTNSRDSRSSCIFLSIPSFPCGGQYKQ 1112

Query: 551  AR 556
             R
Sbjct: 1113 KR 1114


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 250 ISDISRKHCTDDGLNKCIIMHR-DRHICLGRIFCHYHLVIYIVTG 119
           ++D +R+    D   +  IM R D  +C+ R+F H  L +Y +TG
Sbjct: 63  VTDFTRQCVDTDCSTQFTIMRRCDVGMCVFRVFFHEWLQVYPITG 107


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9   EGYNGCPTLQTETHYCFTAEIGGVVVPTRADSQ--EVLPPVTIYITKW 146
           E  + CP  Q E H C   E  G+       S+    LP  T+Y  KW
Sbjct: 192 EDPSSCPGAQIEIHQCSDQECNGIYDCDFEKSELCNWLPKQTVYKLKW 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,056,233
Number of Sequences: 59808
Number of extensions: 453826
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)