Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0270
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    30   1.8  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    30   1.8  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  NALLLHGRNRRSGGTYPCG 100
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  NALLLHGRNRRSGGTYPCG 100
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 368 GSSRSTNGAFRYLKHWSS-FSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRF 544
           G  +   G +R+LK W++ + +  S A   ST  +      L  S DL S    RS GR 
Sbjct: 762 GQLKEKKGRWRFLKRWNTKYFTLSSAALNYSTQHMPTDSRALLPSIDLRSIRSVRSLGRG 821

Query: 545 CEAR 556
            +AR
Sbjct: 822 KKAR 825


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,279
Number of Sequences: 27780
Number of extensions: 335466
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)