Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0270
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l...    29   2.9  
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit...    27   8.9  

>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
           similarity to huntingtin interacting protein 1 [Homo
           sapiens] GI:12697196; contains Pfam profile PF00856: SET
           domain; identical to cDNA ASH1-like protein 3 (ASHH3)
           partial cds GI:15488419
          Length = 363

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 150 WQNILPRQICLSLCI--IIHLFRPSSVQCF 233
           W N+  R  C   CI  +I L RP+S +CF
Sbjct: 299 WNNLSQRDTCSRNCIGVVIRLSRPTSDRCF 328


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 504 SGEKLSGLCLRVNLLVEPFVAS 439
           SG+++ G CLR NL+ + +VA+
Sbjct: 146 SGKEVHGFCLRKNLICDAYVAT 167


>At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At10), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
           [Arabidopsis thaliana]
          Length = 152

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 268 SCHCVTISDISRKHCTDDGL 209
           +C C TI+ +S   CTD+G+
Sbjct: 23  ACQCQTIAHMSEDDCTDNGI 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,030
Number of Sequences: 28952
Number of extensions: 312277
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)