Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0267
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    48   4e-07
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   1.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   7.2  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +2

Query: 8   ILKIQFFTIFIGVNITFFPQHFLGLAGIPRDI 103
           +  IQF+ +FIGVNI F PQHFLGL G+PR I
Sbjct: 415 LASIQFWILFIGVNIVFGPQHFLGLNGMPRRI 446


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 383 THYRANWVPGPPSSXXXXXXXFLKIGSSLYEC 288
           T+Y +NW P P  +       +LK  S L EC
Sbjct: 491 TYYMSNWEPPPKETDRNRWKAWLKGYSDLLEC 522


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 7   YTKNSIFYNIYWSKYNIFSTTFFR 78
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 217 QRINLFSLNLPSSIE*YQNLPPAEHSYNELPI 312
           Q+IN+  LN+ +S      L   E SYN L I
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYNFLTI 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,261
Number of Sequences: 5004
Number of extensions: 21006
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)