Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0267
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
          protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 25 FYNIYWSKYNIFSTTF 72
          F+NIYWS Y IF  TF
Sbjct: 11 FFNIYWSFYAIFGFTF 26


>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
          protein C50B6.7 protein.
          Length = 713

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 1  FLYTKNSIFYNIYW 42
          FL+ K+SI YN YW
Sbjct: 8  FLFIKSSIAYNFYW 21


>AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical
           protein F26G5.1 protein.
          Length = 566

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 277 PPAEHSYNELPILRN 321
           PPA+HS  ELP+L++
Sbjct: 111 PPADHSNKELPLLKS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,292,348
Number of Sequences: 27780
Number of extensions: 113734
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)