Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0267
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   4.4  
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...    26   7.6  
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    26   7.6  
At1g68340.1 68414.m07806 expressed protein                             26   7.6  

>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 170 NREIYEPNEEIIFHEIYESG 111
           N E +EPN++++F EI++ G
Sbjct: 141 NIEGFEPNQKLVFDEIFKEG 160


>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  KIQFFTIFIGVNITFFPQHFLGLAGIPRDIQIIQTHIFHE 133
           K +F  + +G N  F  +   GLA   +D++  Q H F+E
Sbjct: 599 KRKFVIVQVGENEPFVSELLTGLATTVQDLEPHQIHSFYE 638


>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  KIQFFTIFIGVNITFFPQHFLGLAGIPRDIQIIQTHIFHE 133
           K +F  + +G +  F  +   GLA I  D+Q  Q H F+E
Sbjct: 600 KRKFVIVQVGESEPFVSELLSGLATIVGDLQPHQIHTFYE 639


>At1g68340.1 68414.m07806 expressed protein
          Length = 246

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 176 TDNREIYEPNEEIIFHEIYESG*SEYREVFQLNLKNVVEKM 54
           + N E    N  +      + G  E+RE   L+L+NV +KM
Sbjct: 56  SSNFESDHQNRRLKVESSEKEGIEEFREKIMLDLRNVADKM 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,634,990
Number of Sequences: 28952
Number of extensions: 97535
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)