Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0266
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.67 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 15/64 (23%), Positives = 24/64 (37%)
 Frame = +2

Query: 485 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHXPTPSCVWLSRSRPHRLPH 664
           PP  S            +P +       V   P P   D+   +P    LS S+P + P 
Sbjct: 765 PPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQ 824

Query: 665 EDPH 676
           ++P+
Sbjct: 825 QNPY 828


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 376  LRVAPEEHPVLLTEAPLNPKANREKM 453
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 173 HHLPAKPALHIPEPLSTTNAATSSS 99
           HHL     +  PEP  ++ ++T SS
Sbjct: 342 HHLHVAKQMASPEPPKSSESSTGSS 366


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 519 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTXPRHP 623
           ++  +++HR        C P   +L +I + P HP
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 279 FALCLISYIRVFC 241
           F LC++SY+ V C
Sbjct: 9   FTLCIVSYMMVRC 21


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 579 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 487
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,580
Number of Sequences: 438
Number of extensions: 5262
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)