Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0265
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   2.2  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   3.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   5.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   5.0  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   8.7  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 37  ASGGFEVKIQI*KVHTTVLVSVPCENVHGALEKREMSGFVCVLMLPGVASAQIPWTASD 213
           ASGG + KI I KV     V  P E+VH   E +  S  V ++     A+  +  +++D
Sbjct: 98  ASGGDDSKIMIWKVPEDYTVMEPYEDVHPIAELKGHSRKVGLVQYHPTAANVLASSSAD 156


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 256 PGKQYSSS*HIS*PHLMPSKVFERRRRQEASGHTRIPTSLSSLKHRV 116
           PG   +   + S PH++  K FER R + +S      +SL+S +  V
Sbjct: 223 PGTAITLPPYESDPHMLNEKDFERLRLESSSSPMMRRSSLNSNRRSV 269


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 17  TPLLPVKPLEALKLKFKFRKYIPQCLCLF 103
           T +L V  +EA K + K  +YI   +CLF
Sbjct: 46  TEVLKVSEIEAKKRRRKKHRYIYLAVCLF 74


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 245 LLPGRPTDALRAMLSAIKHTITTIAAFALRNA 340
           L+P  P +A+   L A++HT+   +   L NA
Sbjct: 392 LIPTNPEEAVNNALKALQHTLKISSKPTLTNA 423


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 174 RKHQDTHESRHLSLL*STVYIFAGNRHKHCGMYFLNLNFNFKA 46
           +K   + + R  S L      F GNR+ H     L LNF+  A
Sbjct: 612 KKSWTSQQKRDFSRLPRFTLNFIGNRYDHAKKRLLILNFDGNA 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,672
Number of Sequences: 5004
Number of extensions: 38705
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)