Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0265
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0930 - 32801737-32801936,32802038-32802107 29 1.6
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 1.6
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 2.8
03_06_0272 - 32775620-32776501 28 3.7
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 27 4.9
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 4.9
07_03_0849 + 21997758-21998423 27 4.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 6.5
10_02_0130 + 5592305-5592913 27 6.5
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 27 6.5
11_08_0033 + 27820563-27823482,27823593-27823996 27 8.6
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 27 8.6
04_04_0036 - 22307328-22308026 27 8.6
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 8.6
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 259 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 342
T + C V N+ + DSGLCV CQ
Sbjct: 27 TAQLETCTEVINREYPTCDSGLCVANCQ 54
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 205 PSKVFERRRRQEASGHTRIPTSLSSLKHRVHFRR 104
PS+ +RR R +SG R S SS +HR H +
Sbjct: 47 PSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHK 80
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 87 SAC-VCSLRKCTRCFREERDVGIRVCPDASWRRLRSNTLDGIR 212
+AC VC C C+ ER G + CP + R IR
Sbjct: 36 AACDVCGFPVCRPCYEYERKDGTQACPQCKTKYKRHKGSPAIR 78
>03_06_0272 - 32775620-32776501
Length = 293
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 182 PPLKYLGRHQMRSADMSAR--RILLPGRPTDALRAMLSA 292
PPL+++ ++ +D + R LLP D LRA LSA
Sbjct: 143 PPLRFIVAKLLQRSDFYPQQARFLLPSSAADNLRAFLSA 181
>11_01_0466 +
3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 151 IPTSLSSLKHRVHFRREQTQALWYVLSKFEF*LQSLQRLD 32
IP+SLS+L H V + Q L + S F LQ L R+D
Sbjct: 431 IPSSLSNLSHLVELYLQSNQLLGNIPSSFGK-LQFLTRID 469
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.5 bits (58), Expect = 4.9
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 8 PRPTPLLPVKPLEALKLKFKFRKYIPQCLCLFPAKMYTVL*RRERCRDSCVS*CFLASPP 187
P P+ PL +L + K+R Y+ C+ + VL + + + + C L SP
Sbjct: 1017 PFTLPVAGHFPLRSLSFQSKWRTYLRSCVRNNLRTFFQVLVQSQWWYN--LEGCLLHSPH 1074
Query: 188 LKYLGRHQMRSAD 226
LKYL + S+D
Sbjct: 1075 LKYLRILDVSSSD 1087
>07_03_0849 + 21997758-21998423
Length = 221
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 181 ASAQIPWTASDAVS*YVS*TNTASRETNRCAPCN 282
+S+ +PW+++ A+S + ++++S T APC+
Sbjct: 74 SSSSVPWSSTSALSLDSARSSSSSSSTTTTAPCS 107
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 90 ACV-CSLRKCTRCFREERDVGIRVCPDASWRRLR 188
AC C C C+ ER G + CP + R R
Sbjct: 36 ACAECGFPVCKPCYEYERSEGTQCCPQCNTRYKR 69
>10_02_0130 + 5592305-5592913
Length = 202
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 134 RERCRDSCVS*CFLASP--PLKYLGRHQMRSADMSARRILLPGRPTDALRAMLSAIKHT 304
R+ R++ + C ++ P G H R D S R+ L G P + +LS + HT
Sbjct: 71 RDVFREALLRLCGISIPLDVANSFGMHPYREEDDSRCRLRLTGEPEGSRCTLLSELAHT 129
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 382 SPNVACTSNPIDNLGIP*RKGRYRSYGVFYCR 287
S + A + P+D LGIP + Y GV CR
Sbjct: 15 SASAAASRPPLDTLGIPPQDEAYFRGGVIRCR 46
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 254 GRPTDALRAMLSAIKHTITTIAAFALRNAKVIYWI*GTCDVRRRPR 391
G AL A + + + +A RNA + W+ +C RRRPR
Sbjct: 38 GDDLSALLAFKAQLSDPLGVLATSWTRNASLCRWVGVSCS-RRRPR 82
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 26.6 bits (56), Expect = 8.6
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +1
Query: 4 SAEAHSVIARQASGGFEVKIQI*KVHTTVLVSVPCENVHGAL---EKREMSGFVCVLMLP 174
S EA A Q SG E ++ +VH+T V HG L S L P
Sbjct: 1344 STEAQDASAEQMSGKAESQMAYSQVHSTTSVDHKESEPHGTLVTSSGNAPSYKDVALARP 1403
Query: 175 G-VASAQIPWTASDAV 219
G +A AQI + D V
Sbjct: 1404 GTIAKAQIQKSRDDVV 1419
>04_04_0036 - 22307328-22308026
Length = 232
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 247 ASRETNRCAPCNVVCNKTHHNYDSG 321
A R+ R PC CN +YD G
Sbjct: 125 AERQVQRGGPCRCACNYCGGHYDDG 149
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 87 SAC-VCSLRKCTRCFREERDVGIRVCPDASWRRLR 188
+AC VC C C+ ER G + CP + R
Sbjct: 30 TACDVCGFPVCRPCYEYERKDGSQACPQCKTKYKR 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,289
Number of Sequences: 37544
Number of extensions: 293447
Number of successful extensions: 777
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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