Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0265
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      32   0.17 
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    29   2.2  
SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)                    28   3.8  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   8.7  
SB_673| Best HMM Match : VWA (HMM E-Value=8.9e-25)                     27   8.7  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 539

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 207 CRPRYLSGGDARKHQDTH---ESRHLSLL*STVYIFAGNRHKH 88
           C  R++  GD RKH+ TH   +  H SL     +  +GN  KH
Sbjct: 274 CNKRFVESGDMRKHERTHTGYKPYHCSLC-DKAFTISGNLQKH 315


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 250 SRETNRCAPCNVVCNKTHHNY 312
           S ETN  +P N++CN  H +Y
Sbjct: 640 SLETNTASPPNIICNSGHASY 660


>SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)
          Length = 129

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 93  CVCSLRKCTRCFREERDVGIRVCPDASWRRL-RSNTLDGIRC 215
           C CS R   RC R+ +D+ +  C     + L R N     RC
Sbjct: 11  CTCSQRVVKRCARKNKDLDLSTCQCVDVQALQRVNQSSKSRC 52


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/63 (25%), Positives = 23/63 (36%)
 Frame = +1

Query: 106  CENVHGALEKREMSGFVCVLMLPGVASAQIPWTASDAVS*YVS*TNTASRETNRCAPCNV 285
            CEN H        SG  C   +PG+  ++         S          +  + C PC+V
Sbjct: 916  CENCHPTCASCSSSGPKCTSCIPGLVLSEKGGVCESECS------KGRYKSGDACKPCHV 969

Query: 286  VCN 294
             CN
Sbjct: 970  SCN 972


>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 241 NTASRETNRCAPCNVVCNKTHHNYDSGLCVKECQGYLL 354
           NT   + N C   N  C+ T  N++ G      +GY L
Sbjct: 98  NTTCADINECVTSNGNCSHTCVNWEGGFNCTCAEGYAL 135


>SB_673| Best HMM Match : VWA (HMM E-Value=8.9e-25)
          Length = 257

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 188 LKYLGRHQMRSA-DMSARRILL--PGRPT-DALRAMLSAIKHTITTIAAFALRNAKVIYW 355
           LKY+      +A D +A+ ++L   G  T + + A+   +K     I    L+NA  IYW
Sbjct: 93  LKYINNSLFPAARDNTAKMLVLITSGNSTSETITAVAEDLKRQRIDILVLTLKNANEIYW 152

Query: 356 I 358
           +
Sbjct: 153 L 153


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 293 IKHTITTIAAFALRNAKVIYWI*GTCDVRRRPRTQRFGKHTP 418
           +KHT  TIA    +  + + W    C + R    ++  K+ P
Sbjct: 215 VKHTDRTIARIVNKKDRFVMWAASHCGLERERFIKQLSKYIP 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,863
Number of Sequences: 59808
Number of extensions: 337145
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)