Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0265
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63730.1 68418.m07999 IBR domain-containing protein contains ...    29   1.8  
At5g47590.1 68418.m05874 heat shock protein-related contains sim...    28   2.4  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    27   4.1  
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR...    27   5.5  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    27   5.5  
At1g76350.1 68414.m08871 RWP-RK domain-containing protein simila...    27   7.2  
At4g21060.1 68417.m03045 galactosyltransferase family protein co...    26   9.6  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    26   9.6  

>At5g63730.1 68418.m07999 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 506

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 93  CVCSLRKCTRCFREE 137
           CVC LR C+RC R E
Sbjct: 277 CVCRLRFCSRCLRSE 291


>At5g47590.1 68418.m05874 heat shock protein-related contains
           similarity to mitochondrial small heat shock protein
           [Lycopersicon esculentum] gi|3492854|dbj|BAA32547
          Length = 264

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 239 RILLPGRPTDALRAMLSAIKHTITTIAAFALRNAK 343
           R+ LPG P DA+R  + A++  +   +   L N K
Sbjct: 50  RVDLPGVPDDAVRYRVDAVRQKVVFFSGETLNNGK 84


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 90  AC-VCSLRKCTRCFREERDVGIRVCPDASWRRLR 188
           AC +CS   C  C+  ER  G + CP    R  R
Sbjct: 38  ACDICSFPVCRPCYEYERKDGNQSCPQCKTRYKR 71


>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.; closest
           homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1404

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 93  CVCSLRKCTRCFREERDVGIRVCPDASWRRLRSNTLDGIRCGQLICQLDEYCFPGDQPMR 272
           C+  L +  +CF +   + I V  D     +R  T +  +  +  C++ +   PGDQ  R
Sbjct: 82  CLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVSKDKQPGDQKQR 141

Query: 273 SVQ 281
            VQ
Sbjct: 142 WVQ 144


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.; closest
           homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 93  CVCSLRKCTRCFREERDVGIRVCPDASWRRLRSNTLDGIRCGQLICQLDEYCFPGDQPMR 272
           C+  L +  +CF +   + I V  D     +R  T +  +  +  C++ +   PGDQ  R
Sbjct: 82  CLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVSKDKQPGDQKQR 141

Query: 273 SVQ 281
            VQ
Sbjct: 142 WVQ 144


>At1g76350.1 68414.m08871 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 808

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 179 SPPLKYLGRHQMRSADMSARRILLPGRPTDALRAMLSAIKHTITT 313
           SPP K  G     S+  S+   ++   PTD  R +  + K T TT
Sbjct: 655 SPPAKSPGSSCSHSSSCSSETQVIKEDPTDKTRLVSRSFKETQTT 699


>At4g21060.1 68417.m03045 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 741

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -3

Query: 412 MLPKSLGAGPSPNVACTSNPIDNLGIP*RKGRYRSYGVFYCRQHCTERIGWSPG 251
           +LP  L AG S  +  T        +P R    RSYG+    Q   E  G   G
Sbjct: 251 LLPCGLAAGSSITILGTPQYAHKESVPQRSRLTRSYGMVLVSQFMVELQGLKTG 304


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 99  CSLRKCTRCFREERDVGIRVCPDASWRRLRSN 194
           C    C  C+  ER  G + CP    R  R N
Sbjct: 55  CGFPLCQSCYEYERKDGSQCCPQCKARFRRHN 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,569,853
Number of Sequences: 28952
Number of extensions: 217061
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)