Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0258
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    28   0.099
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.6  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 639 SSNSFRSEGWGSRCNYTEILELISHGGWRI 550
           + NS +  G      Y EI+EL   GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 306 NISFRIFGGSQFVRF*KTLY 365
           +++FRIF  +Q+VR   T Y
Sbjct: 332 SLAFRIFQSTQYVRHKNTPY 351


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 490 RPSI*AIKIKNFSAPRG 440
           RPS  + K KN+SAP G
Sbjct: 48  RPSFKSRKPKNYSAPIG 64


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 618 QTETNYCFTAEIGRAVMPTRADSQEVLPPG 707
           +T+ N C   E  R V+P     + + P G
Sbjct: 90  KTKVNNCDVIEKPRKVLPNFKTDEPICPDG 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,522
Number of Sequences: 336
Number of extensions: 4565
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)