Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0258
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704...    29   3.2  

>03_05_0713 -
           27070063-27070126,27070202-27070290,27070369-27070428,
           27071110-27071215,27071309-27071428,27072340-27072476,
           27072561-27072647,27073660-27073956
          Length = 319

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 606 CPTLQTETNYCFTAEIGRAVMPTRADSQEVLPPGPPTI 719
           CP  + E++   T +   AV P+  D++E++ P P  I
Sbjct: 255 CPKAKVESSVVATEQSNAAVSPSGIDNKELVVPNPENI 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,381,387
Number of Sequences: 37544
Number of extensions: 458168
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)