Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0258
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -1

Query: 211 TYNLL-LPTRFFLILNNGFK*PLCVCSN*WKANIGMGHAKYLERHEEIIRTFRYKVLRDS 35
           TYN+L  PT + ++L   F+      SN       +G+ K LERH+E +   RY+ + ++
Sbjct: 175 TYNILRAPTNYLVLLKKQFQ-----DSNFGHDWPRVGYWKRLERHKESVLQLRYEKI-EN 228

Query: 34  ISERYSH 14
           ++E Y H
Sbjct: 229 LNEDYEH 235


>Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical
           protein R10E4.9 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 207 TTFYCLHVFF*FLIMVSNNLSVCVQINGKLILAW 106
           T+   L + F F +  SN ++V VQ++G+L++ W
Sbjct: 49  TSLQYLDIPFSFFLTKSNPVAVFVQVSGRLLVLW 82


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 329 RFTICTVLKNFIFLLGFFSNKL*YV-I*IFDCRI 427
           RFT+C +LK+ +F   F+ ++L Y+   IF+C I
Sbjct: 127 RFTLCIILKDAVFGTSFWLDELKYLNDDIFECFI 160


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 514  SGYWSA*TSTNVNAPSTMRYKF*DLSIVTTAAPPFRPKRIT 636
            S YWS+ T  N + PS       DLS ++ A+P   PKRIT
Sbjct: 2082 SDYWSS-TGPNYDQPS-------DLSKLSRASPSLTPKRIT 2114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,033
Number of Sequences: 27780
Number of extensions: 409382
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)