Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0258
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    28   6.2  
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr...    28   8.3  

>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 582 RSQYSY-NGCPTLQTETNYCFTAEIGRAVMPTRADSQEVLP 701
           R+ YSY +  P+L++  NY FTA  G ++  T  ++  +LP
Sbjct: 224 RAAYSYTSNTPSLRS--NYSFTARSGCSISTTMVNNASLLP 262


>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 369

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 138 VQINGKLILAWDTLNISKGMKK 73
           V ++GKL++ WD   +SK  KK
Sbjct: 304 VNLDGKLVMIWDRFTLSKRNKK 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,990
Number of Sequences: 28952
Number of extensions: 365694
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)