Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0256
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1367 - 32974757-32975499,32975957-32976179 30 2.1
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 29 3.6
12_01_0496 + 3939731-3939758,3940459-3942773 29 4.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 4.8
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 29 4.8
01_01_0092 + 722744-723459,723542-723711,723792-724885 29 4.8
06_03_0683 - 23490215-23490997 28 8.3
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 28 8.3
>04_04_1367 - 32974757-32975499,32975957-32976179
Length = 321
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTS---DGYLVVTAPISENVD 516
I+ Q SQ+ +ED + F Q+ H++ L + L + D +++ D
Sbjct: 110 IYFQPSQKLEEDHNYKFVPQYIHSF-LSFGRKYFRINYYLENNRHDSSFQNEVDLAQGGD 168
Query: 517 KTKNTERVVPIVETGAPYKKDEPVEKTTVETLGRFYDSGAEDISSSGSDCSTGT 678
+ R +E G +KK E + L ++ +G+ DI D TG+
Sbjct: 169 QLNRWRRAAQYLEAGIKFKKREYDKLKPHSLLDIWFSNGSMDIPCIVVDEYTGS 222
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 167 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSSMR 9
N S ME I L RAG VTVA ++ RR + N+ DI V ++ R
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKR 310
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 28.7 bits (61), Expect = 4.8
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Frame = +1
Query: 358 GSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVT----APISENVDKTK 525
GS+ D + + + T ++SSA V AEL G LVV + + ++ D
Sbjct: 79 GSKVMLNKDGSMVLTDYDGTVVWQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPT 138
Query: 526 NTERVVPIVETGAPYKKDEPVEKTTVETLGRFYDSGAEDISSSGSD 663
NT + V A +P T+ TL RF D ++ G D
Sbjct: 139 NTLLPMQPVTATAKLVSTDPSHPTSYYTL-RFDDRYVLSLAYDGPD 183
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 168 HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 257
HVPM EP I S C V AD G KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 616 RFYDSGAEDISSSGSDCSTGTRG 684
R D+GA D++SSGS+CS +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 145 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 261
+S + +F NL S PLW +P F D+G ++Y
Sbjct: 92 ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130
>06_03_0683 - 23490215-23490997
Length = 260
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -3
Query: 152 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 18
++TG ++L++ + +T K + + +R E I++D+R+ S
Sbjct: 76 IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 415 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDE 582
T S+ V+ AA + +G + VT+ +S+ VD+ V+P+ A + DE
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDE 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,329
Number of Sequences: 37544
Number of extensions: 277505
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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