Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0256
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 39 0.003
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 33 0.26
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 33 0.26
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 30 1.4
U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical pr... 29 3.2
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 29 3.2
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 29 3.2
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 29 3.2
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 7.5
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 7.5
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 7.5
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 7.5
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 7.5
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 525
I V+GS KED + S F + LP + V ++LT+DG+L + A E K +
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQE 161
Query: 526 NTERV-VPIVETGAPYKK 576
+ + ++ T A +K
Sbjct: 162 GARPIQIKVINTSAEQQK 179
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 352 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 513
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 352 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 513
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 495
+ + E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 57 LLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical
protein T14A8.2 protein.
Length = 202
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 490 TAPISENVDK----TKNTERVVPIVETGAPYKKDEPVEKTTVETLGRFYDSGAEDISSSG 657
TAP+S + K T+ T P++ ++ +P+E TV + S +E SSS
Sbjct: 111 TAPMSSDEPKIEETTEETTEETPVLSKEPEVEESKPIEAATVVSAVEDQPSTSETSSSSS 170
Query: 658 SDCSTGT 678
+ ST +
Sbjct: 171 EEPSTSS 177
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 507
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 51 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 507
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 346 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 507
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 522 EKYRARCTYCRDWRSVQEGRACR 590
+++R+ CT +W S+ G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 495 ADQRKC**NEKYRARCTYCRDWRSVQEG 578
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 495 ADQRKC**NEKYRARCTYCRDWRSVQEG 578
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 495 ADQRKC**NEKYRARCTYCRDWRSVQEG 578
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 495 ADQRKC**NEKYRARCTYCRDWRSVQEG 578
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 495 ADQRKC**NEKYRARCTYCRDWRSVQEG 578
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,546
Number of Sequences: 27780
Number of extensions: 231578
Number of successful extensions: 816
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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