Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0256
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 32 0.43
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 30 1.3
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 2.3
At3g49800.1 68416.m05445 BSD domain-containing protein contains ... 29 3.0
At2g04900.1 68415.m00509 expressed protein 29 3.0
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 28 5.2
At1g64550.1 68414.m07317 ABC transporter family protein similar ... 28 5.2
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 28 6.9
At3g11310.1 68416.m01375 hypothetical protein 28 6.9
At3g07090.1 68416.m00843 expressed protein 28 6.9
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 6.9
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 6.9
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr... 27 9.2
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 406 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 564
F H +N++A+D+ + G +P++ENVD K+T PIV +G+
Sbjct: 19 FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 514 DKTKNTERVVPIVETGAPYKKDEPVEKTTVETLGRFYDSGAEDISSSGSDCSTGTRGEER 693
DK+K T++ +TG+ K VEK TVE +S AE + + +T G+E+
Sbjct: 190 DKSKETDKEK---DTGSIEKNSVDVEKKTVEASDEKKNSEAETRNHEENGLTTEAEGKEK 246
Query: 694 T 696
T
Sbjct: 247 T 247
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 236 KVGISFHKGANRLN---GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTA 66
K+ +S KG L+ G +FSHGN+ S+V+ + +S G +A P M+ A
Sbjct: 461 KITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAVPIAPMRGA 520
Query: 65 KRRGENI 45
R +
Sbjct: 521 GYRAPEV 527
>At3g49800.1 68416.m05445 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 428
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 385 HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 561
H +F+ T S P V S A ++ EL T + E+ D+ ++E V P+ +
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302
Query: 562 APYKKDEP--VEKTTVETL 612
P K EP V+ TVET+
Sbjct: 303 NPSPKSEPEPVKTITVETI 321
>At2g04900.1 68415.m00509 expressed protein
Length = 128
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -3
Query: 539 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 426
T S++ ++ T +L+ A +T+YP+ +T+ + F+G
Sbjct: 58 TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 601 VETLGRFYDSGAEDISSSGSDCSTG 675
VETLGR +DS D++ + S+ TG
Sbjct: 126 VETLGRTWDSSVTDLNRTVSESETG 150
>At1g64550.1 68414.m07317 ABC transporter family protein similar to
ABC transporter protein GB:AAF31030 GI:6899653 from
[Leishmania major]
Length = 715
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 424 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 591
+P N V E+ D + ++ ++++TK E + I+ ET P KD
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287
Query: 592 KTTVE 606
K TVE
Sbjct: 288 KDTVE 292
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 553 ETGAPYKKDEPVEKTTVETLGRFYDSGAEDISSSGSDCSTGTRGEE 690
+ A +++ + T ++L F + ED++ S S+C G + EE
Sbjct: 152 QASASGTEEDTADSETEDSLKSFASAEEEDLADSVSECVEGKKSEE 197
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +1
Query: 352 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-------SDGYLVVTAPISEN 510
V GS+ +DDH + F + P +SS D+ +T D Y+V+ +
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEGGADDDHYIVLNHLVESP 398
Query: 511 VDKTKNTE 534
D+ ++E
Sbjct: 399 HDRAPSSE 406
>At3g07090.1 68416.m00843 expressed protein
Length = 265
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 472 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 588
DG +V AP E + + TE+V P+++ A + KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 491 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 405
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 491 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 405
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
protein / glycosyltransferase sugar-binding DXD
motif-containing protein low similarity to
alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
[gi:5726306], Gb3 synthase, Rattus norvegicus
[gi:9082162] ; contains Pfam profiles PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif
Length = 435
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 589 EKTTVETLGRFYDSGAEDISSSGSDCSTGT 678
E+ T+E+L +F+ +G + S+ DC GT
Sbjct: 168 ERFTIESLFKFHPNGCLILVSNSFDCDRGT 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,347,608
Number of Sequences: 28952
Number of extensions: 219922
Number of successful extensions: 706
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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